Chromsome Reports

Chromosome 10 - Summary - Single Contig

Description of this page

Cell color code:

Color	Genetic, YAC, RH	BAC End Pairs	Clone Overlaps
White	No markers placed	All clone bridges in same contig	Best overlap with succeeding clone or no overlaps
Blue	Marker consistent with alignment of STS map	Clone bridges two adjacent contigs
Green	Marker slightly inconsistent with alignment of STS map	Clone bridges close contigs	Overlap with non-adjacent clone in same contig
Pink	Marker inconsistent with STS map, same chromosome	Mulitple clones bridge to distant contig, same chromosome	Overlap with clone on different contig, same chromosome
Red	Marker inconsistent with STS map, different chromosome	Mulitple clones bridge to contig on different chromosome	Overlap with clone on different chromosome
Yellow	Marker not placed on any accession in contig, but alignment with STS map indicates it is in contig		Overlap with clone not used in assembly

NT_024115	NT_024081	NT_033983	NT_033894	NT_033916	NT_008705	NT_033921	NT_033986
NT_033892	NT_033226	NT_033223	NT_033227	NT_033912	NT_033982	NT_033988	NT_033896
NT_024133	NT_033987	NT_033985	NT_031847	NT_030066	NT_030772	NT_033228	NT_008646
NT_017696	NT_031860	NT_033898	NT_033920	NT_008748	NT_033222	NT_033990	NT_024085
NT_033984	NT_008797	NT_033897	NT_008583	NT_033220	NT_033891	NT_033895	NT_033917
NT_033989	NT_033918	NT_033919	NT_033893	NT_024037	NT_030075	NT_033890	NT_024064
NT_030070	NT_008769	NT_033229	NT_030059	NT_008818	NT_033221	NT_031855	NT_031856
NT_008902	NT_030764	NT_027097	NT_024086	NT_025835	NT_033224	NT_033225	NT_024040
NT_017795	NT_028298

NT_008583

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_008583	AC022361	64871970	1	none	none	none	0 confirm	0 weak 2 green 2 yellow
NT_008583	AC024598	64879814	3	none	none	1 blue	5 confirm 6 blue	102397 strong 1 pink
NT_008583	AC067752	65054548	3	none	none	none	8 confirm 2 blue	0 weak
NT_008583	AC067751	65176704	3	3 blue	1 blue	2 blue	19 confirm	108489 strong 1 yellow
NT_008583	AL133417	65319484	3	none	none	3 blue 1 green	9 confirm	2000 strong 2 yellow
NT_008583	AL357125	65394756	3	none	none	none	8 confirm	2000 strong 1 yellow
NT_008583	AL583888	65524207	3	1 blue	none	none	1 confirm	1999 medium
NT_008583	AL590502	65524964	2	none	1 blue	3 blue 1 green	15 confirm	7458 strong
NT_008583	AL713895	65698546	2	none	1 blue	4 blue	3 confirm	111296 strong 1 yellow
NT_008583	AL607128	65834369	3	1 blue	none	8 blue 1 green	16 confirm	1994 medium 1 yellow
NT_008583	AC022022	65882816	3	none	none	2 blue	18 confirm	0 weak 1 yellow
NT_008583	AL607062	66064424	3	none	none	1 blue	20 confirm	0 weak 2 yellow
NT_008583	AC022387	66150630	3	none	none	1 blue 1 pink	17 confirm	13299 strong 1 green 1 yellow
NT_008583	AC069543	66334449	3	none	none	none	13 confirm	121497 strong 1 green 2 yellow
NT_008583	AC044782	66500932	3	none	none	none	1 confirm	33648 strong 1 yellow
NT_008583	AC012558	66618507	3	1 blue	2 blue	2 blue	20 confirm	85873 strong 1 yellow
NT_008583	AC018977	66686361	3	1 blue	1 blue	none	18 confirm	12272 strong 1 yellow
NT_008583	AC027670	66811142	3	none	none	none	22 confirm	1995 medium
NT_008583	AL512450	67000947	3	none	none	none	8 confirm	2838 strong
NT_008583	AC013287	67034628	3	none	none	none	20 confirm	8999 strong
NT_008583	AC069020	67206368	3	none	1 blue	1 blue	20 confirm	44074 strong 2 yellow
NT_008583	AC024600	67468739	3	1 blue	none	1 blue 1 green	11 confirm	1994 medium 3 yellow
NT_008583	AL590411	67586615	3	1 blue	none	1 blue 1 pink	12 confirm 1 red	2000 strong 1 yellow
NT_008583	AL590324	67605912	3	none	none	none	0 confirm	2000 strong
NT_008583	AL513321	67607906	2	none	none	none	13 confirm 2 red	2000 strong

NT_008583 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_008583	AL591687	67786882	3	none	none	none	0 confirm	1998 medium
NT_008583	AL592466	67801579	3	none	none	none	17 confirm 3 red	1996 medium 1 yellow
NT_008583	AL390865	67912850	3	none	1 blue	none	14 confirm 1 red	13051 strong 1 yellow
NT_008583	AC020641	68196320	3	1 blue	1 blue	2 blue	18 confirm	48233 strong 1 yellow
NT_008583	AC022538	68303225	3	1 blue	1 blue	2 blue	13 confirm 2 pink	33764 strong 1 yellow
NT_008583	AC018979	68331633	3	none	1 blue	2 blue 1 green	20 confirm 1 pink	928 medium 1 green 1 yellow
NT_008583	AC022017	68499212	3	none	1 blue	1 green	19 confirm	2000 strong 2 green 1 yellow
NT_008583	AL592075	68678446	3	none	none	none	8 confirm	1994 medium 1 green
NT_008583	AC027675	68744845	1	none	1 blue	1 blue	5 confirm 14 blue 1 pink	18437 strong 1 pink
NT_008583	AC021888	68746369	1	none	none	none	0 confirm	0 weak 2 green
NT_008583	AC007484	68831398	1	none	none	none	0 confirm 11 pink	124067 strong 1 yellow
NT_008583	AC016043	68854567	1	2 pink	1 pink	1 green 2 pink	0 confirm 9 pink	0 weak 1 yellow
NT_008583	AP001355	69081450	1	none	none	none	3 confirm 3 pink	0 weak 2 green 1 yellow
NT_008583	-			0 yellow	0 yellow	15 yellow