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  Chromosome 10 - Summary - Single Contig
 
Description of this page Main Reports Page Main Assembly Page Main Summary Page Whole Chromosome Single Contigs

Cell color code:

ColorGenetic, YAC, RHBAC End PairsClone Overlaps
WhiteNo markers placedAll clone bridges in same contigBest overlap with succeeding clone or no overlaps
BlueMarker consistent with alignment of STS mapClone bridges two adjacent contigs 
GreenMarker slightly inconsistent with alignment of STS mapClone bridges close contigsOverlap with non-adjacent clone in same contig
PinkMarker inconsistent with STS map, same chromosomeMulitple clones bridge to distant contig, same chromosomeOverlap with clone on different contig, same chromosome
RedMarker inconsistent with STS map, different chromosomeMulitple clones bridge to contig on different chromosomeOverlap with clone on different chromosome
YellowMarker not placed on any accession in contig, but alignment with STS map indicates it is in contig Overlap with clone not used in assembly

NT_024115 NT_024081 NT_033983 NT_033894 NT_033916 NT_008705 NT_033921 NT_033986
NT_033892 NT_033226 NT_033223 NT_033227 NT_033912 NT_033982 NT_033988 NT_033896
NT_024133 NT_033987 NT_033985 NT_031847 NT_030066 NT_030772 NT_033228 NT_008646
NT_017696 NT_031860 NT_033898 NT_033920 NT_008748 NT_033222 NT_033990 NT_024085
NT_033984 NT_008797 NT_033897 NT_008583 NT_033220 NT_033891 NT_033895 NT_033917
NT_033989 NT_033918 NT_033919 NT_033893 NT_024037 NT_030075 NT_033890 NT_024064
NT_030070 NT_008769 NT_033229 NT_030059 NT_008818 NT_033221 NT_031855 NT_031856
NT_008902 NT_030764 NT_027097 NT_024086 NT_025835 NT_033224 NT_033225 NT_024040
NT_017795 NT_028298


  NT_033982
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_033982AL3582343272585321 blue
 1 blue
 none 9 confirm
7 pink
 82731 strong
1 pink
2 yellow
NT_033982AL1619363281698831 blue
1 green
 6 blue
 6 blue
2 green
 21 confirm
5 pink
 0 weak
3 yellow
NT_033982AL3553763307796931 red
 none 1 blue
 22 confirm
1 blue
 0 weak
2 yellow
NT_033982AL390248330817363none none none 16 confirm
3 blue
 0 weak
2 yellow
NT_033982AL359995332055343none none none 5 confirm
1 blue
2 pink
 0 weak
NT_033982AL3558583325736933 blue
 2 blue
 1 blue
 18 confirm
10 pink
 0 weak
1 pink
1 yellow
NT_033982AL3571183344945731 blue
 1 blue
 none 11 confirm
4 pink
 0 weak
2 pink
2 yellow
NT_033982AL3651803352383531 blue
 2 blue
 1 blue
 10 confirm
4 pink
 0 weak
1 pink
1 yellow
NT_033982AL1581673359491032 blue
 3 blue
 20 blue
1 pink
 22 confirm
15 pink
 0 weak
3 yellow
NT_033982AL160060337815163none none 2 blue
 14 confirm
 0 weak
3 yellow
NT_033982AL1591703397839332 blue
 2 blue
 1 blue
 17 confirm
 0 weak
2 yellow
NT_033982AL3530933414402431 blue
 2 blue
 none 18 confirm
 2000 strong
2 yellow
NT_033982AL158036342501343none 1 blue
 6 blue
 13 confirm
 2000 strong
2 yellow
NT_033982AL3601723447204231 blue
 2 blue
 3 blue
 17 confirm
 0 weak
1 green
3 yellow
NT_033982AL3537963454968331 blue
 1 blue
 6 blue
 7 confirm
 0 weak
1 green
2 yellow
NT_033982AL1616513479312031 blue
 1 blue
 3 blue
 19 confirm
 2000 strong
5 yellow
NT_033982AL590068347943553none none none 8 confirm
 1998 medium
1 yellow
NT_033982AL451107348641353none 1 blue
 5 blue
 10 confirm
 17699 strong
1 yellow
NT_033982AL3595323506018621 blue
 1 blue
 1 blue
 15 confirm
 88804 strong
NT_033982AC025341352094351none none none 0 confirm
 3987 medium
2 green
1 yellow
NT_033982AL591707352107043none none none 0 confirm
 0 weak
NT_033982AL596113352146983none none none 8 confirm
 2000 strong
1 green
1 yellow
NT_033982AL3595463542503831 blue
 none 2 blue
 21 confirm
 0 weak
1 green
2 yellow
NT_033982AL356258354531303none none none 10 confirm
 2000 strong
2 yellow
NT_033982AL1173403564032032 blue
 1 blue
 4 blue
1 green
 25 confirm
 0 weak
2 yellow


  NT_033982 (cont)
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_033982AL1580803572349931 blue
 1 blue
 2 blue
 8 confirm
 0 weak
1 yellow
NT_033982AL355148357622613none none none 8 confirm
 0 weak
2 yellow
NT_033982AL1619353579257631 blue
 2 blue
 3 blue
 20 confirm
 0 weak
4 yellow
NT_033982AL353769359775273none none 1 blue
 10 confirm
 0 weak
2 yellow
NT_033982AL390715360550361none none 1 blue
 16 confirm
5 blue
 0 weak
1 green
2 yellow
NT_033982AL591705362359681none none none 0 confirm
 0 weak
2 green
4 yellow
NT_033982AL365319362440381none none none 0 confirm
 85146 strong
1 green
1 pink
1 yellow
NT_033982AL161932362486413none none 5 blue
 6 confirm
8 blue
 0 weak
2 pink
NT_033982-  1 yellow
 0 yellow
 21 yellow