Chromsome Reports

Chromosome 10 - Summary - Single Contig

Description of this page

Cell color code:

Color	Genetic, YAC, RH	BAC End Pairs	Clone Overlaps
White	No markers placed	All clone bridges in same contig	Best overlap with succeeding clone or no overlaps
Blue	Marker consistent with alignment of STS map	Clone bridges two adjacent contigs
Green	Marker slightly inconsistent with alignment of STS map	Clone bridges close contigs	Overlap with non-adjacent clone in same contig
Pink	Marker inconsistent with STS map, same chromosome	Mulitple clones bridge to distant contig, same chromosome	Overlap with clone on different contig, same chromosome
Red	Marker inconsistent with STS map, different chromosome	Mulitple clones bridge to contig on different chromosome	Overlap with clone on different chromosome
Yellow	Marker not placed on any accession in contig, but alignment with STS map indicates it is in contig		Overlap with clone not used in assembly

NT_024115	NT_024081	NT_033983	NT_033894	NT_033916	NT_008705	NT_033921	NT_033986
NT_033892	NT_033226	NT_033223	NT_033227	NT_033912	NT_033982	NT_033988	NT_033896
NT_024133	NT_033987	NT_033985	NT_031847	NT_030066	NT_030772	NT_033228	NT_008646
NT_017696	NT_031860	NT_033898	NT_033920	NT_008748	NT_033222	NT_033990	NT_024085
NT_033984	NT_008797	NT_033897	NT_008583	NT_033220	NT_033891	NT_033895	NT_033917
NT_033989	NT_033918	NT_033919	NT_033893	NT_024037	NT_030075	NT_033890	NT_024064
NT_030070	NT_008769	NT_033229	NT_030059	NT_008818	NT_033221	NT_031855	NT_031856
NT_008902	NT_030764	NT_027097	NT_024086	NT_025835	NT_033224	NT_033225	NT_024040
NT_017795	NT_028298

NT_033894

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_033894	AC044784	8875317	1	1 blue 1 green	none	1 green	11 confirm 6 blue	119958 strong 1 yellow
NT_033894	AC016309	8807879	1	none	none	none	0 confirm 2 blue	17918 strong 1 green 1 yellow
NT_033894	AL365269	8987515	3	none	none	none	10 confirm 1 blue	1997 medium
NT_033894	AL136453	9019287	3	2 blue	2 blue	1 pink	19 confirm	0 weak 2 green
NT_033894	AL138770	9103297	3	none	none	none	6 confirm	51137 strong 1 green
NT_033894	AL138774	9210706	1	2 blue	none	1 green	12 confirm	76485 strong 1 yellow
NT_033894	AC012544	9184692	1	none	none	2 pink	6 confirm	11024 strong 2 green 1 yellow
NT_033894	AL138773	9327591	3	1 green	none	1 pink	12 confirm	1999 medium 1 yellow
NT_033894	AL355591	9366976	3	1 blue	none	1 pink	15 confirm	1998 medium
NT_033894	AL139009	9492254	3	none	1 blue	none	11 confirm	0 weak 1 yellow
NT_033894	AL157401	9662911	3	none	none	none	17 confirm	100 weak 1 yellow
NT_033894	AL358214	9792621	3	none	none	none	27 confirm	0 weak 1 yellow
NT_033894	AL392047	9973707	3	none	none	none	6 confirm	1997 medium 1 yellow
NT_033894	AL138775	10031021	3	none	1 blue	none	18 confirm	100 weak 1 yellow
NT_033894	AL136318	10144323	3	none	none	none	3 confirm	2000 strong
NT_033894	AL512657	10199507	3	none	none	none	2 confirm	2000 strong
NT_033894	AL354916	10203296	3	none	none	none	14 confirm	2000 strong
NT_033894	AL583859	10497327	2	1 blue	1 blue	2 blue	17 confirm	0 weak 1 yellow
NT_033894	AL138772	10507054	3	none	none	none	4 confirm	100 weak
NT_033894	AL158836	10562789	3	none	none	none	13 confirm	100 weak
NT_033894	AL136319	10668875	3	1 green	1 blue	none	13 confirm	100 weak
NT_033894	AL136452	10743514	3	none	1 blue	5 blue	16 confirm	102 weak
NT_033894	AL136369	10890519	3	none	none	2 blue	15 confirm	0 weak 1 yellow
NT_033894	AL162408	11001368	3	none	none	3 blue	2 confirm	0 weak 1 yellow
NT_033894	AL138769	11027573	3	none	2 blue	4 blue	21 confirm	100 weak 1 green 1 yellow

NT_033894 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_033894	AL136320	11126073	3	none	none	3 blue	3 confirm	50206 strong 1 yellow
NT_033894	AL157704	11200406	1	1 blue	1 blue	4 blue	5 confirm	31366 strong 1 green 2 yellow
NT_033894	AC026887	11231974	3	none	3 blue 1 red	10 blue	15 confirm	16207 strong 4 yellow
NT_033894	AL590416	11403255	2	none	2 blue	7 blue	11 confirm	2000 strong 2 yellow
NT_033894	AL512631	11574281	3	none	none	1 blue	9 confirm	2000 strong
NT_033894	AL138898	11715144	3	none	1 blue	12 blue 2 green	12 confirm	967 medium
NT_033894	AL645617	11919731	3	none	none	none	9 confirm	2000 strong 1 yellow
NT_033894	AC073160	11995049	3	none	none	7 blue	12 confirm	2000 strong 1 yellow
NT_033894	AL512770	12180866	3	none	none	1 blue 1 green 1 pink	7 confirm	2000 strong
NT_033894	AL391314	12306012	3	none	none	1 blue	7 confirm	1996 medium 1 green 1 yellow
NT_033894	AL603717	12433447	3	none	none	none	0 confirm 1 blue	1992 medium
NT_033894	AL512284	12537370	3	1 blue	1 green	1 blue	6 confirm 5 blue	31253 strong 1 yellow
NT_033894	AC084688	12550826	1	none	none	none	0 confirm	0 weak 1 green 1 yellow
NT_033894	-			1 yellow	2 yellow	1 yellow