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  Chromosome 10 - Summary - Single Contig
 
Description of this page Main Reports Page Main Assembly Page Main Summary Page Whole Chromosome Single Contigs

Cell color code:

ColorGenetic, YAC, RHBAC End PairsClone Overlaps
WhiteNo markers placedAll clone bridges in same contigBest overlap with succeeding clone or no overlaps
BlueMarker consistent with alignment of STS mapClone bridges two adjacent contigs 
GreenMarker slightly inconsistent with alignment of STS mapClone bridges close contigsOverlap with non-adjacent clone in same contig
PinkMarker inconsistent with STS map, same chromosomeMulitple clones bridge to distant contig, same chromosomeOverlap with clone on different contig, same chromosome
RedMarker inconsistent with STS map, different chromosomeMulitple clones bridge to contig on different chromosomeOverlap with clone on different chromosome
YellowMarker not placed on any accession in contig, but alignment with STS map indicates it is in contig Overlap with clone not used in assembly

NT_024115 NT_024081 NT_033983 NT_033894 NT_033916 NT_008705 NT_033921 NT_033986
NT_033892 NT_033226 NT_033223 NT_033227 NT_033912 NT_033982 NT_033988 NT_033896
NT_024133 NT_033987 NT_033985 NT_031847 NT_030066 NT_030772 NT_033228 NT_008646
NT_017696 NT_031860 NT_033898 NT_033920 NT_008748 NT_033222 NT_033990 NT_024085
NT_033984 NT_008797 NT_033897 NT_008583 NT_033220 NT_033891 NT_033895 NT_033917
NT_033989 NT_033918 NT_033919 NT_033893 NT_024037 NT_030075 NT_033890 NT_024064
NT_030070 NT_008769 NT_033229 NT_030059 NT_008818 NT_033221 NT_031855 NT_031856
NT_008902 NT_030764 NT_027097 NT_024086 NT_025835 NT_033224 NT_033225 NT_024040
NT_017795 NT_028298


  NT_008748
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_008748AL662872549293521none none none 0 confirm
 61697 strong
1 green
NT_008748AC026223549366811none none none 4 confirm
 0 weak
2 green
NT_008748AL365506549472063none none none 5 confirm
 2000 strong
NT_008748AC073174550290373none none 1 blue
 9 confirm
1 green
 26846 strong
1 yellow
NT_008748AC069077551885823none none none 19 confirm
 25599 strong
NT_008748AC0361015536673332 blue
 2 blue
 2 blue
1 green
 22 confirm
 0 weak
1 green
NT_008748AL3554955556473633 blue
 3 blue
 none 18 confirm
 2000 strong
2 green
NT_008748AL672165557220383none none none 1 confirm
 1997 medium
NT_008748AL589983557266613none none none 7 confirm
 100 weak
NT_008748AL365496557727292none none none 20 confirm
 15473 strong
NT_008748AC016817559463571none none 1 blue
1 green
 11 confirm
 78390 strong
1 green
NT_008748AC021350560111291none none none 0 confirm
 27924 strong
NT_008748AC027671560748323none none 1 blue
 16 confirm
 52822 strong
1 green
NT_008748AC024073562276993none none none 19 confirm
 62236 strong
NT_008748AC0137375645392631 blue
1 green
 1 blue
 1 blue
 16 confirm
 2000 strong
NT_008748AL360214564887723none none none 5 confirm
 1982 weak
NT_008748AL353784565383993none none none 9 confirm
 53331 strong
NT_008748AL391356567061771none none none 0 confirm
 26543 strong
NT_008748AL3561145677448731 blue
 1 blue
 1 blue
 6 confirm
 35198 strong
NT_008748AC051618569256653none none none 10 confirm
 15977 strong
1 yellow
NT_008748AC079271570391563none none 1 blue
 14 confirm
 46533 strong
2 yellow
NT_008748AL390785572396313none none none 21 confirm
 0 weak
1 green
2 yellow
NT_008748AL603835573961923none none none 2 confirm
 1993 medium
NT_008748AC016822574012973none none none 15 confirm
5 green
 2000 strong
1 green
1 yellow
NT_008748AL355314575716693none none none 3 confirm
5 green
 0 weak


  NT_008748 (cont)
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_008748AC016286576435151none none none 0 confirm
 0 weak
2 green
2 yellow
NT_008748-  1 yellow
 0 yellow
 6 yellow