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  Chromosome 10 - Summary - Single Contig
 
Description of this page Main Reports Page Main Assembly Page Main Summary Page Whole Chromosome Single Contigs

Cell color code:

ColorGenetic, YAC, RHBAC End PairsClone Overlaps
WhiteNo markers placedAll clone bridges in same contigBest overlap with succeeding clone or no overlaps
BlueMarker consistent with alignment of STS mapClone bridges two adjacent contigs 
GreenMarker slightly inconsistent with alignment of STS mapClone bridges close contigsOverlap with non-adjacent clone in same contig
PinkMarker inconsistent with STS map, same chromosomeMulitple clones bridge to distant contig, same chromosomeOverlap with clone on different contig, same chromosome
RedMarker inconsistent with STS map, different chromosomeMulitple clones bridge to contig on different chromosomeOverlap with clone on different chromosome
YellowMarker not placed on any accession in contig, but alignment with STS map indicates it is in contig Overlap with clone not used in assembly

NT_024115 NT_024081 NT_033983 NT_033894 NT_033916 NT_008705 NT_033921 NT_033986
NT_033892 NT_033226 NT_033223 NT_033227 NT_033912 NT_033982 NT_033988 NT_033896
NT_024133 NT_033987 NT_033985 NT_031847 NT_030066 NT_030772 NT_033228 NT_008646
NT_017696 NT_031860 NT_033898 NT_033920 NT_008748 NT_033222 NT_033990 NT_024085
NT_033984 NT_008797 NT_033897 NT_008583 NT_033220 NT_033891 NT_033895 NT_033917
NT_033989 NT_033918 NT_033919 NT_033893 NT_024037 NT_030075 NT_033890 NT_024064
NT_030070 NT_008769 NT_033229 NT_030059 NT_008818 NT_033221 NT_031855 NT_031856
NT_008902 NT_030764 NT_027097 NT_024086 NT_025835 NT_033224 NT_033225 NT_024040
NT_017795 NT_028298


  NT_033985
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_033985AL591702448430531none none none 0 confirm
2 red
 22119 strong
1 green
NT_033985AL512654448617183none none 1 blue
1 green
 3 confirm
2 blue
 1996 medium
NT_033985AL450326449069943none none none 7 confirm
3 blue
 0 weak
1 green
NT_033985AL6456344513298031 blue
 1 blue
 2 blue
2 green
 10 confirm
 2000 strong
1 yellow
NT_033985AL3559894527683531 blue
 2 blue
 1 blue
 21 confirm
 0 weak
3 yellow
NT_033985AL1392374544755731 blue
 1 blue
 1 green
 18 confirm
4 pink
 0 weak
2 yellow
NT_033985AL512640454591403none none none 19 confirm
6 pink
1 red
 1997 medium
2 yellow
NT_033985AL392045455534623none none none 17 confirm
5 pink
2 red
 0 weak
1 pink
2 yellow
NT_033985AL1370264584383931 blue
 2 blue
 6 blue
1 green
1 pink
 14 confirm
6 pink
3 red
 2000 strong
3 yellow
NT_033985AL355141458958693none none none 6 confirm
 0 weak
1 yellow
NT_033985AL356157459245003none none none 22 confirm
2 red
 0 weak
2 yellow
NT_033985AL359677461214173none none none 13 confirm
 2000 strong
1 yellow
NT_033985AL139119462378693none none none 20 confirm
 2000 strong
1 yellow
NT_033985AL353801463291933none none 8 blue
1 green
 21 confirm
 2000 strong
1 yellow
NT_033985AL390758465496833none none none 0 confirm
 2000 strong
NT_033985AL358394465629333none none none 9 confirm
 2000 strong
1 yellow
NT_033985AL512324466777923none none none 8 confirm
5 pink
 33977 strong
1 green
NT_033985AC0108654693832611 blue
 none 5 blue
2 pink
 0 confirm
5 pink
 55933 strong
NT_033985AC011879468988091none none none 0 confirm
 0 weak
1 green
NT_033985-  1 yellow
 0 yellow
 6 yellow