Chromsome Reports

Chromosome 10 - Summary - Single Contig

Description of this page

Cell color code:

Color	Genetic, YAC, RH	BAC End Pairs	Clone Overlaps
White	No markers placed	All clone bridges in same contig	Best overlap with succeeding clone or no overlaps
Blue	Marker consistent with alignment of STS map	Clone bridges two adjacent contigs
Green	Marker slightly inconsistent with alignment of STS map	Clone bridges close contigs	Overlap with non-adjacent clone in same contig
Pink	Marker inconsistent with STS map, same chromosome	Mulitple clones bridge to distant contig, same chromosome	Overlap with clone on different contig, same chromosome
Red	Marker inconsistent with STS map, different chromosome	Mulitple clones bridge to contig on different chromosome	Overlap with clone on different chromosome
Yellow	Marker not placed on any accession in contig, but alignment with STS map indicates it is in contig		Overlap with clone not used in assembly

NT_024115	NT_024081	NT_033983	NT_033894	NT_033916	NT_008705	NT_033921	NT_033986
NT_033892	NT_033226	NT_033223	NT_033227	NT_033912	NT_033982	NT_033988	NT_033896
NT_024133	NT_033987	NT_033985	NT_031847	NT_030066	NT_030772	NT_033228	NT_008646
NT_017696	NT_031860	NT_033898	NT_033920	NT_008748	NT_033222	NT_033990	NT_024085
NT_033984	NT_008797	NT_033897	NT_008583	NT_033220	NT_033891	NT_033895	NT_033917
NT_033989	NT_033918	NT_033919	NT_033893	NT_024037	NT_030075	NT_033890	NT_024064
NT_030070	NT_008769	NT_033229	NT_030059	NT_008818	NT_033221	NT_031855	NT_031856
NT_008902	NT_030764	NT_027097	NT_024086	NT_025835	NT_033224	NT_033225	NT_024040
NT_017795	NT_028298

NT_033983

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_033983	AC053504	5516566	1	none	none	none	0 confirm	24525 strong 2 green
NT_033983	AL365356	5520216	3	none	none	5 blue 1 green	8 confirm	1993 medium
NT_033983	AL596094	5687892	3	none	none	3 blue 1 green 1 pink	17 confirm	1999 medium 1 green
NT_033983	AL137186	5793372	3	none	none	10 blue	17 confirm	1997 medium 1 green
NT_033983	AL157395	5982979	3	none	none	6 blue	18 confirm	2000 strong 2 yellow
NT_033983	AL359960	6155819	3	none	none	2 blue	9 confirm	2000 strong
NT_033983	AL137145	6222932	3	none	1 blue	6 blue 1 red	17 confirm	0 weak 2 yellow
NT_033983	AL158043	6410699	3	none	1 blue	5 blue	15 confirm	100 weak 1 yellow
NT_033983	AL158210	6604984	3	1 blue	1 blue	4 blue	16 confirm	0 weak 1 yellow
NT_033983	AL590637	6678065	3	none	none	none	12 confirm	0 weak 1 yellow
NT_033983	AL392086	6716460	3	none	none	1 blue	20 confirm	1998 medium 2 yellow
NT_033983	AL357147	6936585	3	none	none	none	5 confirm	1999 medium
NT_033983	AL590095	7078716	3	1 blue	1 blue	4 blue	22 confirm	99 weak 1 yellow
NT_033983	AL138771	7144346	3	none	none	none	6 confirm	0 weak 1 yellow
NT_033983	AL158046	7194718	3	1 blue	none	3 blue	19 confirm	100 weak 1 yellow
NT_033983	AL139125	7292557	3	none	none	none	10 confirm	1999 medium
NT_033983	AL445070	7416894	3	none	none	none	5 confirm	2000 strong
NT_033983	AL355374	7462738	3	none	none	1 blue	5 confirm	2000 strong
NT_033983	AL158044	7543450	3	none	none	4 blue 1 green	14 confirm	0 weak 1 yellow
NT_033983	AL353754	7715811	3	none	none	1 blue	23 confirm	2000 strong 2 yellow
NT_033983	AL159172	7887569	3	none	none	2 blue	3 confirm	0 weak 1 yellow
NT_033983	AL390294	8048236	3	1 blue	none	7 blue	12 confirm	100 weak 2 yellow
NT_033983	AL357712	8094956	3	1 blue	1 blue	1 blue	10 confirm	1998 medium 1 yellow
NT_033983	AL390835	8189631	3	none	none	none	2 confirm	2000 strong
NT_033983	AL356784	8253139	3	none	none	none	1 confirm	1998 medium

NT_033983 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_033983	AC025946	8266618	3	none	1 blue	3 blue	16 confirm	1991 medium
NT_033983	AL139403	8461803	3	none	none	1 blue	9 confirm	1998 medium
NT_033983	AL355333	8641343	3	2 blue 1 green	1 blue	none	7 confirm 9 blue	0 weak 1 yellow
NT_033983	-			1 yellow	0 yellow	19 yellow