Chromsome Reports

Chromosome 10 - Summary - Single Contig

Description of this page

Cell color code:

Color	Genetic, YAC, RH	BAC End Pairs	Clone Overlaps
White	No markers placed	All clone bridges in same contig	Best overlap with succeeding clone or no overlaps
Blue	Marker consistent with alignment of STS map	Clone bridges two adjacent contigs
Green	Marker slightly inconsistent with alignment of STS map	Clone bridges close contigs	Overlap with non-adjacent clone in same contig
Pink	Marker inconsistent with STS map, same chromosome	Mulitple clones bridge to distant contig, same chromosome	Overlap with clone on different contig, same chromosome
Red	Marker inconsistent with STS map, different chromosome	Mulitple clones bridge to contig on different chromosome	Overlap with clone on different chromosome
Yellow	Marker not placed on any accession in contig, but alignment with STS map indicates it is in contig		Overlap with clone not used in assembly

NT_024115	NT_024081	NT_033983	NT_033894	NT_033916	NT_008705	NT_033921	NT_033986
NT_033892	NT_033226	NT_033223	NT_033227	NT_033912	NT_033982	NT_033988	NT_033896
NT_024133	NT_033987	NT_033985	NT_031847	NT_030066	NT_030772	NT_033228	NT_008646
NT_017696	NT_031860	NT_033898	NT_033920	NT_008748	NT_033222	NT_033990	NT_024085
NT_033984	NT_008797	NT_033897	NT_008583	NT_033220	NT_033891	NT_033895	NT_033917
NT_033989	NT_033918	NT_033919	NT_033893	NT_024037	NT_030075	NT_033890	NT_024064
NT_030070	NT_008769	NT_033229	NT_030059	NT_008818	NT_033221	NT_031855	NT_031856
NT_008902	NT_030764	NT_027097	NT_024086	NT_025835	NT_033224	NT_033225	NT_024040
NT_017795	NT_028298

NT_033896

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_033896	AC094097	37331393	1	none	none	none	1 confirm	6926 strong 1 green 2 yellow
NT_033896	AL591850	37335430	3	none	none	none	4 confirm 4 blue	0 weak
NT_033896	AL365203	37365941	3	none	none	3 blue	12 confirm 5 blue	0 weak 1 green 2 yellow
NT_033896	AL133333	37561914	3	none	none	1 blue	3 confirm	0 weak 2 yellow
NT_033896	AL121748	37756769	3	1 blue	1 blue	3 blue 1 pink	17 confirm	2000 strong 2 yellow
NT_033896	AL353600	37783707	3	none	none	none	16 confirm	1994 medium 1 green
NT_033896	AL392109	37906247	3	none	none	none	1 confirm	8388 strong
NT_033896	AL392188	37968767	1	1 blue	1 blue	none	13 confirm	0 weak 2 green 1 yellow
NT_033896	AC084133	37983400	1	none	none	2 red	0 confirm	0 weak 3 green 1 yellow
NT_033896	AL356243	38028007	3	none	none	none	0 confirm	0 weak
NT_033896	AC018980	38032007	3	none	none	1 blue	20 confirm	0 weak 2 green 1 yellow
NT_033896	AL450313	38227714	3	none	none	none	6 confirm	1999 medium 1 green
NT_033896	AL353643	38269691	3	none	1 blue	none	16 confirm	0 weak 1 green
NT_033896	AL117338	38541521	3	1 blue	2 blue	1 blue	21 confirm	0 weak 2 yellow
NT_033896	AL160409	38566447	3	none	none	1 pink	15 confirm	0 weak 3 yellow
NT_033896	AL390766	38670645	3	none	none	2 blue	23 confirm	2000 strong 5 yellow
NT_033896	AL392123	38861776	3	none	none	none	14 confirm	0 weak
NT_033896	AL360233	38964133	3	none	none	none	14 confirm	2000 strong 3 yellow
NT_033896	AL138768	39071949	3	none	none	3 blue	11 confirm	1998 medium 3 yellow
NT_033896	AL590039	39246354	3	none	none	none	5 confirm	2000 strong
NT_033896	AL603963	39322186	3	none	none	none	1 confirm	2000 strong
NT_033896	AL450337	39337443	3	none	none	none	13 confirm	1998 medium 1 yellow
NT_033896	AL392046	39511193	3	1 blue	1 blue	1 blue	11 confirm	0 weak 2 yellow
NT_033896	AL157783	39655701	3	none	none	1 blue	3 confirm	0 weak 2 yellow
NT_033896	AL117336	39811631	3	1 blue	1 blue	4 blue	10 confirm	0 weak 2 yellow

NT_033896 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_033896	AL603824	39940034	3	none	none	3 blue	10 confirm	0 weak 2 yellow
NT_033896	AL592445	40027905	3	none	none	none	3 confirm	0 weak 3 yellow
NT_033896	AL121749	40143245	3	1 blue	1 blue	14 blue	8 confirm	1998 medium 2 yellow
NT_033896	AL358173	40218325	3	none	none	none	1 confirm	1998 medium
NT_033896	AL356093	40414478	3	1 blue	1 blue	none	15 confirm	2000 strong 2 yellow
NT_033896	AL157892	40418856	3	none	none	none	2 confirm	1995 medium 1 yellow
NT_033896	AL365500	40443035	3	1 blue	1 blue	none	16 confirm	0 weak 1 yellow
NT_033896	AL355300	40593753	3	none	none	none	11 confirm	50054 strong 1 yellow
NT_033896	AC018684	40733209	3	none	none	none	23 confirm	0 weak 2 yellow
NT_033896	AL390859	40859016	3	none	none	none	18 confirm	0 weak 2 yellow
NT_033896	AL590730	40974542	3	none	none	none	24 confirm	2000 strong 2 yellow
NT_033896	AL354660	41158843	3	none	none	none	5 confirm	2000 strong 1 yellow
NT_033896	AL355517	41295591	2	2 blue	2 blue	2 blue	26 confirm	0 weak 4 yellow
NT_033896	AL390061	41357756	3	none	none	none	19 confirm 1 red	0 weak 4 yellow
NT_033896	AL591105	41531902	3	none	none	none	2 confirm 1 red	1992 medium
NT_033896	AC067744	41541267	3	none	none	none	28 confirm 3 red	79039 strong 1 yellow
NT_033896	AL357148	41696322	2	none	none	none	47 confirm 2 red	62327 strong 1 green
NT_033896	AL157387	41759436	3	none	none	none	41 confirm	2000 strong 1 green
NT_033896	AL391686	41909166	3	none	1 blue	1 blue	14 confirm	0 weak 1 yellow
NT_033896	AL133350	42023079	3	1 blue	1 blue	none	6 confirm	100 weak 1 yellow
NT_033896	AL121927	42056837	3	none	none	none	21 confirm	0 weak 1 yellow
NT_033896	AL132657	42176058	3	none	none	none	19 confirm	100 weak 1 yellow
NT_033896	AL135791	42336701	3	none	none	2 blue	12 confirm	0 weak 2 yellow
NT_033896	AL132659	42403576	3	none	none	none	4 confirm	0 weak 2 yellow
NT_033896	AL117337	42431981	3	none	none	2 blue	19 confirm	0 weak 3 yellow

NT_033896 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_033896	AL161931	42593333	3	none	none	1 blue 1 pink	3 confirm	0 weak 2 yellow
NT_033896	AL117339	42613086	3	none	none	7 blue	21 confirm 9 red	0 weak 4 yellow
NT_033896	AL132658	42821628	3	none	none	none	6 confirm 6 red	0 weak
NT_033896	AL133217	42841618	3	none	1 red	none	11 confirm 12 red	0 weak 2 yellow
NT_033896	AL133216	42905599	3	none	none	none	7 confirm 3 red	0 weak 2 yellow
NT_033896	AL391494	43072433	1	none	none	none	0 confirm	0 weak 2 green
NT_033896	-			0 yellow	1 yellow	7 yellow