Chromsome Reports

Chromosome 10 - Summary - Single Contig

Description of this page

Cell color code:

Color	Genetic, YAC, RH	BAC End Pairs	Clone Overlaps
White	No markers placed	All clone bridges in same contig	Best overlap with succeeding clone or no overlaps
Blue	Marker consistent with alignment of STS map	Clone bridges two adjacent contigs
Green	Marker slightly inconsistent with alignment of STS map	Clone bridges close contigs	Overlap with non-adjacent clone in same contig
Pink	Marker inconsistent with STS map, same chromosome	Mulitple clones bridge to distant contig, same chromosome	Overlap with clone on different contig, same chromosome
Red	Marker inconsistent with STS map, different chromosome	Mulitple clones bridge to contig on different chromosome	Overlap with clone on different chromosome
Yellow	Marker not placed on any accession in contig, but alignment with STS map indicates it is in contig		Overlap with clone not used in assembly

NT_024115	NT_024081	NT_033983	NT_033894	NT_033916	NT_008705	NT_033921	NT_033986
NT_033892	NT_033226	NT_033223	NT_033227	NT_033912	NT_033982	NT_033988	NT_033896
NT_024133	NT_033987	NT_033985	NT_031847	NT_030066	NT_030772	NT_033228	NT_008646
NT_017696	NT_031860	NT_033898	NT_033920	NT_008748	NT_033222	NT_033990	NT_024085
NT_033984	NT_008797	NT_033897	NT_008583	NT_033220	NT_033891	NT_033895	NT_033917
NT_033989	NT_033918	NT_033919	NT_033893	NT_024037	NT_030075	NT_033890	NT_024064
NT_030070	NT_008769	NT_033229	NT_030059	NT_008818	NT_033221	NT_031855	NT_031856
NT_008902	NT_030764	NT_027097	NT_024086	NT_025835	NT_033224	NT_033225	NT_024040
NT_017795	NT_028298

NT_030075

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_030075	AC012046	77451907	1	1 blue	none	2 blue	7 confirm	0 weak 2 green
NT_030075	AC063962	77425618	1	none	none	1 blue 1 green	2 confirm 2 pink	0 weak 1 green
NT_030075	AL357037	77515500	3	none	1 blue	2 blue 3 green	1 confirm 1 pink	2000 strong 1 green
NT_030075	AL360225	77681273	3	none	none	none	0 confirm 5 pink	0 weak
NT_030075	AC022540	77783370	3	none	none	1 blue 2 green	8 confirm	107865 strong 1 green
NT_030075	AC022026	77853106	3	none	none	2 blue	28 confirm	47243 strong
NT_030075	AC091699	78023940	1	none	none	1 green	11 confirm	28641 strong
NT_030075	AC025425	78024466	1	none	1 blue	2 blue 5 green 3 pink	5 confirm 6 pink	0 weak 1 yellow
NT_030075	AC022393	78293180	1	2 blue	3 blue	2 blue	6 confirm 8 pink	145031 strong 1 green 1 pink
NT_030075	AC010199	78371703	1	none	1 blue	1 blue	0 confirm 4 pink	73076 strong 1 pink
NT_030075	AC087586	78397638	1	none	none	none	0 confirm 2 pink	12944 strong 1 green
NT_030075	AL512628	78482921	3	none	1 blue	3 blue	5 confirm 2 pink	0 weak
NT_030075	AL391421	78576483	3	none	none	1 blue	7 confirm 1 pink	2000 strong 4 yellow
NT_030075	AL450306	78742722	3	none	none	5 blue	2 confirm	2000 medium 2 yellow
NT_030075	AC022397	78860460	1	2 blue	2 blue	6 blue	3 confirm	0 weak 1 green 4 yellow
NT_030075	AC018511	78894156	3	none	none	1 blue	5 confirm 6 pink	4000 strong 1 green
NT_030075	AL392111	79053673	3	none	none	2 blue 1 pink	13 confirm	0 weak 1 green
NT_030075	AL390034	79209038	3	none	none	2 blue	4 confirm	33741 strong
NT_030075	AC027393	79245717	1	none	none	none	0 confirm	48359 strong 1 green
NT_030075	AC010997	79248303	1	none	1 blue	3 blue 1 pink	11 confirm	1994 medium
NT_030075	AL645925	79410706	3	none	none	1 blue	7 confirm	1997 medium
NT_030075	AL596260	79453051	3	1 blue	1 blue	1 blue	5 confirm	1999 medium 1 green
NT_030075	AL589863	79486520	3	none	none	1 blue	13 confirm	31755 weak 1 green
NT_030075	AC074324	79652750	1	none	none	2 blue	13 confirm	2779 medium
NT_030075	AC010912	79675185	1	none	none	none	0 confirm	0 weak 2 green

NT_030075 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_030075	AL607027	79792236	3	none	none	1 blue	2 confirm	2000 strong
NT_030075	AL136451	79825726	3	1 blue	1 blue	3 blue	16 confirm	2000 strong
NT_030075	AC012047	79928290	3	none	none	1 blue	21 confirm	23902 strong
NT_030075	AC012048	80265247	3	1 blue	1 blue 1 pink	3 blue	21 confirm	0 weak 1 yellow
NT_030075	AC013286	80395185	3	1 blue	1 blue	2 blue	16 confirm	71066 strong 1 yellow
NT_030075	AC024603	80537960	3	2 blue	none	5 blue	20 confirm	60969 strong
NT_030075	AC013285	80546925	1	none	none	none	7 confirm	51499 strong
NT_030075	AC013738	80756206	3	1 blue	2 blue	none	22 confirm	36093 strong 1 yellow
NT_030075	AC011439	80789636	3	none	3 blue	6 blue	23 confirm	45382 strong 1 yellow
NT_030075	AC024949	80957136	1	1 blue	none	none	12 confirm	1991 medium
NT_030075	AL157833	81040838	3	none	none	none	4 confirm	2000 strong 1 green
NT_030075	AC021032	81130574	3	1 blue	2 blue	1 blue	13 confirm	126832 strong 1 green
NT_030075	AC012111	81217564	1	none	none	none	0 confirm	25990 strong 2 green 1 yellow
NT_030075	AC067724	81220436	1	none	none	none	0 confirm	29326 strong 2 green 1 yellow
NT_030075	AC022020	81223546	1	none	none	1 blue	14 confirm	29519 strong 3 green 1 yellow
NT_030075	AC087418	81298652	1	none	none	none	3 confirm	117843 strong 3 green 1 yellow
NT_030075	AC021027	81302378	1	none	none	none	6 confirm	49304 strong 4 green 1 yellow
NT_030075	AL627447	81311035	3	none	none	1 blue	3 confirm	0 weak 2 green 1 yellow
NT_030075	AC067745	81454229	1	1 blue	none	1 blue	7 confirm	53601 strong 2 green
NT_030075	AC013420	81433821	1	none	none	none	3 confirm	0 weak 2 green
NT_030075	AC084015	81600502	1	none	none	none	1 confirm	0 weak 1 green 4 yellow
NT_030075	-			0 yellow	2 yellow	25 yellow