Chromsome Reports

Chromosome 10 - Summary - Single Contig

Description of this page

Cell color code:

Color	Genetic, YAC, RH	BAC End Pairs	Clone Overlaps
White	No markers placed	All clone bridges in same contig	Best overlap with succeeding clone or no overlaps
Blue	Marker consistent with alignment of STS map	Clone bridges two adjacent contigs
Green	Marker slightly inconsistent with alignment of STS map	Clone bridges close contigs	Overlap with non-adjacent clone in same contig
Pink	Marker inconsistent with STS map, same chromosome	Mulitple clones bridge to distant contig, same chromosome	Overlap with clone on different contig, same chromosome
Red	Marker inconsistent with STS map, different chromosome	Mulitple clones bridge to contig on different chromosome	Overlap with clone on different chromosome
Yellow	Marker not placed on any accession in contig, but alignment with STS map indicates it is in contig		Overlap with clone not used in assembly

NT_024115	NT_024081	NT_033983	NT_033894	NT_033916	NT_008705	NT_033921	NT_033986
NT_033892	NT_033226	NT_033223	NT_033227	NT_033912	NT_033982	NT_033988	NT_033896
NT_024133	NT_033987	NT_033985	NT_031847	NT_030066	NT_030772	NT_033228	NT_008646
NT_017696	NT_031860	NT_033898	NT_033920	NT_008748	NT_033222	NT_033990	NT_024085
NT_033984	NT_008797	NT_033897	NT_008583	NT_033220	NT_033891	NT_033895	NT_033917
NT_033989	NT_033918	NT_033919	NT_033893	NT_024037	NT_030075	NT_033890	NT_024064
NT_030070	NT_008769	NT_033229	NT_030059	NT_008818	NT_033221	NT_031855	NT_031856
NT_008902	NT_030764	NT_027097	NT_024086	NT_025835	NT_033224	NT_033225	NT_024040
NT_017795	NT_028298

NT_008902

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_008902	AC061712	123490412	1	1 red	1 red	12 red	0 confirm 49 red	0 weak 7 red 6 yellow
NT_008902	AL606510	123588182	3	none	none	none	1 confirm	1971 medium 1 yellow
NT_008902	AL445237	123770480	3	2 blue	1 blue	2 blue 1 red	8 confirm	0 weak 2 yellow
NT_008902	AL391708	123869111	3	none	none	none	8 confirm	100 weak 1 yellow
NT_008902	AL513190	123922686	3	none	none	4 blue 2 green	12 confirm	2000 strong 1 yellow
NT_008902	AL136232	124043356	3	none	none	none	1 confirm	2000 strong
NT_008902	AC068896	124052276	3	none	2 blue	4 blue 1 pink	16 confirm 9 pink	0 weak 1 green
NT_008902	AC010158	124245181	1	none	none	1 blue	0 confirm 2 pink	18545 strong 1 green 3 yellow
NT_008902	AC023517	124250703	1	none	none	none	0 confirm	0 weak 1 green
NT_008902	AC010162	124280463	1	none	none	6 blue 2 green 2 pink	9 confirm 8 pink	0 weak 2 green 4 yellow
NT_008902	AC022283	124284724	1	none	1 blue	2 blue	13 confirm 8 pink	0 weak 1 green 1 yellow
NT_008902	AL391988	124487258	3	1 blue	1 blue	7 blue 2 green	7 confirm 4 pink	0 weak 1 yellow
NT_008902	AL359836	124492098	3	none	none	1 blue 1 green	1 confirm	1991 medium 1 yellow
NT_008902	AC005871	124539150	3	none	1 blue	2 blue 2 green	11 confirm	0 weak 1 yellow
NT_008902	AL158078	124725645	3	1 blue	1 blue	1 blue	3 confirm	0 weak
NT_008902	AL356419	124756678	3	2 blue	1 blue	1 pink	13 confirm	2000 strong 4 yellow
NT_008902	AL139121	124852984	3	none	none	none	3 confirm	2000 strong
NT_008902	AL513324	124892911	3	none	1 blue	1 blue	16 confirm	2000 strong
NT_008902	AL390244	125022106	3	none	none	1 blue	18 confirm	2000 strong
NT_008902	AC022395	125194523	1	2 blue	1 blue	6 blue 1 green	18 confirm	128829 strong 1 yellow
NT_008902	AC005879	125313295	3	none	none	1 blue 1 green	8 confirm 3 pink	1980 medium 1 yellow
NT_008902	AL354863	125375396	3	none	none	none	6 confirm 4 pink	1987 medium
NT_008902	AL365498	125524205	3	1 blue	none	1 blue 3 green	20 confirm 3 pink	1999 medium 1 pink
NT_008902	AL356074	125594671	3	none	none	none	7 confirm 3 pink	1999 medium 1 yellow
NT_008902	AL356865	125662858	3	none	none	1 red	22 confirm 5 pink	1993 medium 1 yellow

NT_008902 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_008902	AL139407	125817462	3	none	none	4 blue 1 green	12 confirm	2000 strong
NT_008902	AL157388	126014964	3	1 blue	1 blue	none	18 confirm	2000 strong 1 yellow
NT_008902	AL157788	126137898	3	1 blue	1 blue	4 blue 1 green	4 confirm	0 weak 2 yellow
NT_008902	AL355598	126179838	3	none	none	2 blue 1 red	15 confirm	0 weak 4 yellow
NT_008902	AL355861	126306066	3	none	none	3 blue 2 green	17 confirm	0 weak 3 yellow
NT_008902	AL583824	126472594	3	none	none	none	4 confirm	0 weak 1 yellow
NT_008902	AL355273	126570011	3	1 blue	none	5 blue 1 green	9 confirm	2000 strong 3 yellow
NT_008902	AL592286	126677401	3	none	none	none	3 confirm	1991 medium 1 yellow
NT_008902	AC012468	127130231	1	1 blue	none	5 blue	14 confirm	0 weak 1 green 1 yellow
NT_008902	AL596261	126832311	3	none	none	none	5 confirm 3 pink	47294 strong 4 yellow
NT_008902	AC026886	126879649	3	none	none	none	7 confirm	44309 strong 1 green 5 yellow
NT_008902	AC025945	126922037	3	none	none	2 blue 1 pink	8 confirm 7 pink	2000 strong 3 yellow
NT_008902	AL157888	127058041	3	none	none	none	3 confirm	0 weak
NT_008902	AC005874	127163446	3	none	none	2 blue	0 confirm	106419 strong 1 green 1 yellow
NT_008902	AL158014	127250800	3	1 blue	1 blue	1 blue	19 confirm	2000 strong 1 yellow
NT_008902	AL133461	127310507	3	none	none	10 blue 1 green 1 pink	23 confirm	92145 strong 1 yellow
NT_008902	AC027672	127432835	3	none	none	4 blue	11 confirm	79770 strong 1 yellow
NT_008902	AL355298	127527796	3	none	none	none	14 confirm	2000 strong 1 yellow
NT_008902	AL353664	127610191	3	none	none	none	8 confirm	1994 medium
NT_008902	AC069021	127688134	1	none	none	none	15 confirm	58452 strong
NT_008902	AC073587	127896464	3	1 blue	1 blue	none	19 confirm	1989 medium
NT_008902	AL157782	128019513	3	none	none	none	10 confirm	2000 strong
NT_008902	AC023282	128077236	3	2 blue	1 blue	6 blue	12 confirm	1994 medium
NT_008902	AL596066	128230007	3	none	none	none	1 confirm	1998 medium
NT_008902	AL391425	128232007	2	none	none	none	17 confirm 8 pink	672 medium 1 yellow

NT_008902 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_008902	AC010998	128495258	3	1 blue	none	5 blue	12 confirm 5 pink	0 weak 1 yellow
NT_008902	AL355302	128560690	3	1 blue	none	none	7 confirm 7 pink	1999 medium
NT_008902	AL133384	128713250	3	1 blue	1 pink	6 blue 1 green	13 confirm 3 pink	100 weak
NT_008902	AL590109	128734541	3	none	none	none	2 confirm	0 weak
NT_008902	AL354873	128916805	3	1 blue	1 green	1 blue	24 confirm	549 medium 1 yellow
NT_008902	AL137025	128969768	3	2 blue	2 green	5 blue 1 green	22 confirm	0 weak 2 yellow
NT_008902	AL355340	129107274	3	none	none	1 blue 1 green	17 confirm	0 weak 5 yellow
NT_008902	AL355530	129227008	3	none	none	none	28 confirm	2000 medium 2 yellow
NT_008902	AL512304	129421942	3	none	none	none	5 confirm	2000 strong 1 yellow
NT_008902	AL357059	129490579	3	none	none	none	13 confirm	1998 medium
NT_008902	AL356100	129645666	3	1 blue	none	2 blue 1 green	10 confirm	1989 medium 1 yellow
NT_008902	AL392087	129777772	3	1 blue	none	none	16 confirm	9886 strong 2 yellow
NT_008902	AC091667	129943051	3	none	2 blue	none	23 confirm	43503 strong 2 yellow
NT_008902	AC022542	130118792	3	none	1 blue 1 green	4 blue 3 green	21 confirm	13502 strong 2 yellow
NT_008902	AC073588	130365677	3	1 blue	3 blue	4 blue 1 green	13 confirm 3 pink	24188 strong 2 yellow
NT_008902	AC012470	130484729	3	1 blue	1 blue	3 blue	17 confirm 4 pink	49590 strong 1 pink 1 yellow
NT_008902	AC011328	130559595	3	none	none	none	25 confirm 5 pink	113151 strong 1 green 1 pink
NT_008902	AC011098	130726017	1	none	none	none	0 confirm	31990 strong
NT_008902	AC011329	130726366	1	none	none	none	12 confirm	68469 strong 1 green 3 yellow
NT_008902	AC016825	130940740	3	1 blue	1 blue	3 blue 1 green	21 confirm 1 pink	0 weak 5 yellow
NT_008902	AL607110	130987025	3	1 blue	none	none	4 confirm	0 weak 1 yellow
NT_008902	AC023283	131036813	3	4 blue	5 blue	12 blue 4 green	24 confirm 2 pink	70690 strong 2 yellow
NT_008902	AC012308	131210667	3	none	none	none	10 confirm 5 pink	1442 medium 1 green
NT_008902	AC012391	131340955	1	none	none	11 blue 1 green 1 pink	0 confirm 11 pink	1998 medium
NT_008902	AL589864	131521965	3	none	none	1 pink	3 confirm	1995 medium

NT_008902 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_008902	AL592502	131601442	3	none	none	none	1 confirm	1998 medium
NT_008902	AL160290	131722124	3	1 blue	2 blue	3 blue 1 pink	13 confirm	0 weak 2 yellow
NT_008902	AL357127	131800833	3	none	none	none	17 confirm	0 weak 1 green 1 yellow
NT_008902	AC009987	131940132	3	1 blue	2 blue	4 blue 1 pink	18 confirm	70304 strong 1 green
NT_008902	AC068058	132123942	1	2 blue	2 blue	1 blue 1 pink	4 confirm	0 weak 1 yellow
NT_008902	AC066588	132206039	1	none	none	none	0 confirm	0 weak 2 green
NT_008902	-			6 yellow	3 yellow	57 yellow