Chromsome Reports

Chromosome 10 - Summary - Single Contig

Description of this page

Cell color code:

Color	Genetic, YAC, RH	BAC End Pairs	Clone Overlaps
White	No markers placed	All clone bridges in same contig	Best overlap with succeeding clone or no overlaps
Blue	Marker consistent with alignment of STS map	Clone bridges two adjacent contigs
Green	Marker slightly inconsistent with alignment of STS map	Clone bridges close contigs	Overlap with non-adjacent clone in same contig
Pink	Marker inconsistent with STS map, same chromosome	Mulitple clones bridge to distant contig, same chromosome	Overlap with clone on different contig, same chromosome
Red	Marker inconsistent with STS map, different chromosome	Mulitple clones bridge to contig on different chromosome	Overlap with clone on different chromosome
Yellow	Marker not placed on any accession in contig, but alignment with STS map indicates it is in contig		Overlap with clone not used in assembly

NT_024115	NT_024081	NT_033983	NT_033894	NT_033916	NT_008705	NT_033921	NT_033986
NT_033892	NT_033226	NT_033223	NT_033227	NT_033912	NT_033982	NT_033988	NT_033896
NT_024133	NT_033987	NT_033985	NT_031847	NT_030066	NT_030772	NT_033228	NT_008646
NT_017696	NT_031860	NT_033898	NT_033920	NT_008748	NT_033222	NT_033990	NT_024085
NT_033984	NT_008797	NT_033897	NT_008583	NT_033220	NT_033891	NT_033895	NT_033917
NT_033989	NT_033918	NT_033919	NT_033893	NT_024037	NT_030075	NT_033890	NT_024064
NT_030070	NT_008769	NT_033229	NT_030059	NT_008818	NT_033221	NT_031855	NT_031856
NT_008902	NT_030764	NT_027097	NT_024086	NT_025835	NT_033224	NT_033225	NT_024040
NT_017795	NT_028298

NT_030059

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_030059	AL359388	103616515	1	none	1 red	11 pink	2 confirm 6 pink	26528 strong 1 yellow
NT_030059	AL355315	103922232	3	1 blue 1 pink	none	15 pink	3 confirm 1 pink	1998 medium 1 yellow
NT_030059	AL358938	103925043	3	none	none	2 pink	11 confirm	1993 medium
NT_030059	AL139239	104069169	3	none	none	1 pink	19 confirm	0 weak 1 yellow
NT_030059	AL355301	104228408	3	none	none	none	21 confirm	100 weak 1 yellow
NT_030059	AL139241	104363846	3	none	3 blue	3 pink	24 confirm 1 pink	100 weak
NT_030059	AL139243	104568645	3	1 blue	none	3 pink	16 confirm 3 pink	1999 medium 1 yellow
NT_030059	AL356268	104695301	3	none	none	none	10 confirm 5 pink	0 weak 1 pink
NT_030059	AL356220	104820682	3	none	none	none	17 confirm 8 pink	1999 medium 1 pink
NT_030059	AL391260	104958534	3	none	none	none	15 confirm 2 pink	2000 strong 2 yellow
NT_030059	AL360075	105148763	3	1 blue 1 green	1 blue	none	5 confirm	1999 medium
NT_030059	AL590036	105166258	3	none	none	none	18 confirm	0 weak 1 yellow
NT_030059	AL365210	105361361	3	none	none	none	2 confirm	0 weak 1 yellow
NT_030059	AL445251	105390110	3	none	1 blue	none	9 confirm	2000 strong 1 yellow
NT_030059	AL391684	105517205	3	1 blue 1 green	2 blue	6 pink	12 confirm	1996 medium
NT_030059	AL513542	105682384	3	none	none	none	2 confirm	2000 strong
NT_030059	AL353719	105727003	3	none	1 blue	none	17 confirm	0 weak
NT_030059	AL133353	105848163	3	none	none	10 pink	18 confirm	63382 strong
NT_030059	AL392107	106007267	2	none	none	2 pink	12 confirm	0 weak 1 yellow
NT_030059	AL627434	106098229	3	none	none	1 pink	11 confirm	2000 strong
NT_030059	AL441886	106150543	3	none	none	1 pink	15 confirm	0 weak
NT_030059	AL138921	106284475	2	none	none	9 pink	16 confirm	2000 strong 1 yellow
NT_030059	AL139819	106494131	3	1 blue 1 green	3 blue	10 pink 1 red	13 confirm	2000 strong 2 yellow
NT_030059	AL359759	106590669	3	none	none	none	7 confirm	0 weak
NT_030059	AL391723	106661647	1	none	none	none	0 confirm 21 pink	2164 medium 1 pink 2 yellow

NT_030059 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_030059	AL133352	106764857	1	1 blue 1 green	1 blue	1 blue 6 pink	7 confirm	0 weak 2 yellow
NT_030059	AL360001	106817563	3	none	none	none	1 confirm	1998 medium
NT_030059	AL591408	106948978	3	1 blue	1 blue	1 blue 1 green 3 pink	6 confirm	2000 strong
NT_030059	AL603983	107031882	3	none	none	none	1 confirm	2000 strong
NT_030059	AL139339	107033876	3	none	none	1 blue 3 green 6 pink	9 confirm	0 weak
NT_030059	AL121929	107167683	3	2 blue	none	1 blue 3 green 8 pink	15 confirm	0 weak 5 yellow
NT_030059	AL133355	107410844	3	1 blue	none	1 blue 2 green 1 pink	7 confirm	1998 medium 1 yellow
NT_030059	AL360170	107529646	3	none	none	none	3 confirm	1995 medium
NT_030059	AL138761	107587898	3	none	1 blue	1 blue 5 pink	8 confirm	1995 medium
NT_030059	AL357336	107727869	3	none	none	none	10 confirm	0 weak 2 yellow
NT_030059	AL139341	107780596	3	none	none	1 blue 2 pink	15 confirm	100 weak 2 yellow
NT_030059	AL162742	108008375	3	1 blue	1 blue	2 blue 2 green 2 pink	22 confirm	0 weak 2 yellow
NT_030059	AL355378	108061302	3	none	none	none	2 confirm	0 weak
NT_030059	AL161646	108078794	3	none	none	none	20 confirm	97689 strong
NT_030059	AL355350	108262527	3	none	none	1 blue	5 confirm	2000 strong
NT_030059	AL589942	108318601	3	none	none	none	12 confirm	1998 medium
NT_030059	AL445492	108358403	3	1 blue	none	none	11 confirm	100 weak
NT_030059	AL358949	108495678	3	2 blue	1 blue	1 blue	22 confirm	2000 strong 2 yellow
NT_030059	AL365449	108651242	3	none	none	none	8 confirm	1995 medium 2 yellow
NT_030059	AL353900	108701758	3	1 blue	1 blue	none	20 confirm	0 weak 3 yellow
NT_030059	AL596118	108845837	3	none	none	none	12 confirm	1999 medium 1 yellow
NT_030059	AL450363	108941739	3	none	1 blue	1 blue	14 confirm	1993 medium 1 yellow
NT_030059	AC026225	109054072	3	none	1 blue	none	15 confirm	2000 strong 1 yellow
NT_030059	AL591363	109253249	3	none	none	none	18 confirm	2000 strong
NT_030059	AL450466	109370243	3	1 blue	2 blue	1 blue	8 confirm	35545 strong

NT_030059 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_030059	AC068922	109414794	1	none	none	none	14 confirm	0 weak
NT_030059	AC018944	109525963	1	none	none	none	0 confirm	0 weak 2 green
NT_030059	AL589166	109554316	3	none	none	none	7 confirm	1998 medium
NT_030059	AL358196	109607936	3	none	none	none	9 confirm	2000 strong
NT_030059	AL353148	109803015	3	2 blue	1 blue	1 blue	21 confirm	2000 strong 1 green
NT_030059	AL157710	109856468	3	none	none	none	8 confirm	1998 medium 1 green
NT_030059	AC073369	109981934	3	1 blue 1 green	none	none	14 confirm	79981 strong
NT_030059	AL359847	110030358	3	none	none	none	18 confirm	1998 medium
NT_030059	AL133395	110216585	3	2 blue	1 blue	4 blue	17 confirm	1978 weak
NT_030059	AL357333	110354196	3	none	none	none	21 confirm	2001 strong
NT_030059	AL356255	110439235	3	none	none	none	17 confirm	1995 medium
NT_030059	AL160010	110600513	3	1 blue	1 blue	none	31 confirm	2000 strong
NT_030059	AL356308	110710099	3	none	none	none	11 confirm	1997 medium
NT_030059	AL356439	110811009	3	none	none	none	7 confirm	2000 strong
NT_030059	AL357510	110982686	3	1 blue	3 blue	4 blue	16 confirm	2000 strong
NT_030059	AC022024	111093841	3	2 blue	2 blue	1 blue	19 confirm	17134 strong 1 yellow
NT_030059	AC021039	111223676	3	1 blue	none	1 blue	21 confirm	60371 strong 1 yellow
NT_030059	AC018976	111353139	3	none	1 blue	1 blue	17 confirm	0 weak 1 yellow
NT_030059	AL162273	111479953	3	none	none	none	14 confirm	0 weak 1 yellow
NT_030059	AL355275	111580964	3	none	none	none	9 confirm	100 weak 1 yellow
NT_030059	AL445240	111673374	3	none	none	none	8 confirm	100 weak 2 yellow
NT_030059	AL390834	111826172	3	none	none	none	9 confirm	0 weak 3 yellow
NT_030059	AL355384	111968959	3	1 blue	1 blue	none	19 confirm	2000 strong 2 yellow
NT_030059	AL353740	112109834	3	none	1 blue	1 blue	15 confirm	1999 medium 1 yellow
NT_030059	AL590072	112204931	3	none	none	none	13 confirm	0 weak

NT_030059 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_030059	AL356476	112315376	3	none	none	none	21 confirm	41333 strong 2 green
NT_030059	AC069119	112497886	1	none	none	none	3 confirm	23036 strong 1 green
NT_030059	AC024117	112516955	1	none	none	none	12 confirm	22425 strong 1 green
NT_030059	AL713969	112522853	1	none	none	none	3 confirm 4 pink	21863 strong 4 green
NT_030059	AC083853	112566181	1	none	none	none	0 confirm	117107 strong 2 green
NT_030059	AC037194	112573845	1	none	none	none	0 confirm	0 weak 3 green
NT_030059	AC022373	112581509	1	none	none	none	0 confirm	6369 weak 3 green 3 yellow
NT_030059	AC026686	112590718	1	none	none	none	0 confirm	0 weak 2 green 2 yellow
NT_030059	AL607082	112596815	3	none	1 blue	none	6 confirm	0 weak 3 green
NT_030059	AL157787	112672448	3	none	1 blue	1 blue	17 confirm 4 pink	2000 strong 3 green
NT_030059	AL138766	112824005	3	1 blue	2 blue	1 blue	16 confirm	0 weak 2 green 3 yellow
NT_030059	AL157785	112901853	3	none	none	none	4 confirm	0 weak 1 green 1 yellow
NT_030059	AL355332	113103528	2	1 blue	1 blue	2 blue	17 confirm	2000 strong 1 green 3 yellow
NT_030059	AL589948	113129033	3	none	none	none	13 confirm	1995 medium
NT_030059	AL390123	113226301	3	none	1 blue	1 blue	17 confirm	1984 medium
NT_030059	AL133416	113382394	3	none	none	none	3 confirm	1998 medium
NT_030059	AL354951	113421843	3	none	none	3 blue	15 confirm	2000 strong 1 yellow
NT_030059	AL162613	113625172	3	none	none	1 blue	13 confirm	1997 medium 1 yellow
NT_030059	AL590628	113711754	3	1 blue	2 blue	13 blue	15 confirm	2000 strong
NT_030059	AL360182	113814918	3	none	1 blue	4 blue	22 confirm	0 weak 2 yellow
NT_030059	AL355512	113958174	3	none	2 blue	4 blue	20 confirm	2002 strong 2 yellow
NT_030059	AL359260	114157859	3	none	2 blue	3 blue	24 confirm	2001 strong
NT_030059	AL512508	114308604	3	none	none	1 blue	13 confirm	2000 strong 1 yellow
NT_030059	AL136368	114381127	3	none	none	none	12 confirm	2000 strong 1 yellow
NT_030059	AL158163	114690875	2	1 blue	1 blue	10 blue	22 confirm	1336 medium

NT_030059 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_030059	AL355863	114719883	3	none	1 blue	1 blue	16 confirm	24180 strong
NT_030059	AC021035	114870094	3	none	none	1 blue	16 confirm	79735 strong
NT_030059	AL670843	115019685	1	none	none	none	19 confirm	8366 strong 1 yellow
NT_030059	AC068709	115193128	1	1 blue	none	1 blue	12 confirm	68973 strong
NT_030059	AL356141	115205924	3	none	none	none	13 confirm	2000 strong
NT_030059	AL356772	115293795	3	none	none	none	18 confirm	2000 strong
NT_030059	AL136119	115455656	3	none	none	none	15 confirm	0 weak 1 yellow
NT_030059	AL392167	115582318	3	1 blue	2 blue	1 blue 1 pink	24 confirm	2000 strong 1 yellow
NT_030059	AL359395	115735006	3	none	none	none	1 confirm	2000 strong
NT_030059	AL391986	115744419	3	none	1 blue	4 blue	14 confirm	100 weak
NT_030059	AL157786	116022650	3	1 blue	1 blue	3 blue 1 pink	10 confirm	18348 strong
NT_030059	AC022018	116061567	1	none	1 blue	2 blue	20 confirm	2000 strong 2 yellow
NT_030059	AL512270	116201756	3	none	none	none	11 confirm	2000 strong 2 yellow
NT_030059	AL139120	116217142	3	none	2 blue	4 blue	24 confirm	2000 strong 2 yellow
NT_030059	AL133323	116394656	3	1 blue	1 blue	1 blue	8 confirm	1999 medium
NT_030059	AL158212	116443971	2	none	4 blue	8 blue	19 confirm	2000 strong 1 yellow
NT_030059	AL445486	116618605	3	1 blue	2 blue	3 blue	15 confirm	2000 strong
NT_030059	AL135792	116708274	3	none	none	1 pink	7 confirm	0 weak 1 yellow
NT_030059	AL451084	116759654	3	none	1 blue	4 blue	30 confirm	0 weak 2 yellow
NT_030059	AL357042	116941469	3	none	none	none	17 confirm	2000 strong 2 yellow
NT_030059	AL133482	117054817	3	none	none	2 blue 1 pink	13 confirm	0 weak 1 yellow
NT_030059	AL390197	117120732	3	none	1 blue	6 blue	19 confirm	76113 strong 2 yellow
NT_030059	AL627395	117307081	1	none	none	none	1 confirm	54186 strong 1 yellow
NT_030059	AL592546	117332271	2	none	1 blue	4 blue	18 confirm	2000 strong 1 yellow
NT_030059	AL627429	117507047	3	none	none	none	5 confirm	1997 medium

NT_030059 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_030059	AL162407	117528465	3	none	1 blue	1 blue 2 green	13 confirm	100 weak 2 yellow
NT_030059	AL355543	117656398	3	1 pink	none	1 blue 3 green	16 confirm 3 pink	102845 strong 2 yellow
NT_030059	AC022023	117819522	3	none	none	none	4 confirm 3 pink	31558 strong 1 yellow
NT_030059	AC005383	117903986	3	2 blue	3 blue	3 blue 4 green	1 confirm 4 pink	0 weak 1 yellow
NT_030059	-			10 yellow	11 yellow	15 yellow