Chromsome Reports

Chromosome 10 - Summary - Single Contig

Description of this page

Cell color code:

Color	Genetic, YAC, RH	BAC End Pairs	Clone Overlaps
White	No markers placed	All clone bridges in same contig	Best overlap with succeeding clone or no overlaps
Blue	Marker consistent with alignment of STS map	Clone bridges two adjacent contigs
Green	Marker slightly inconsistent with alignment of STS map	Clone bridges close contigs	Overlap with non-adjacent clone in same contig
Pink	Marker inconsistent with STS map, same chromosome	Mulitple clones bridge to distant contig, same chromosome	Overlap with clone on different contig, same chromosome
Red	Marker inconsistent with STS map, different chromosome	Mulitple clones bridge to contig on different chromosome	Overlap with clone on different chromosome
Yellow	Marker not placed on any accession in contig, but alignment with STS map indicates it is in contig		Overlap with clone not used in assembly

NT_024115	NT_024081	NT_033983	NT_033894	NT_033916	NT_008705	NT_033921	NT_033986
NT_033892	NT_033226	NT_033223	NT_033227	NT_033912	NT_033982	NT_033988	NT_033896
NT_024133	NT_033987	NT_033985	NT_031847	NT_030066	NT_030772	NT_033228	NT_008646
NT_017696	NT_031860	NT_033898	NT_033920	NT_008748	NT_033222	NT_033990	NT_024085
NT_033984	NT_008797	NT_033897	NT_008583	NT_033220	NT_033891	NT_033895	NT_033917
NT_033989	NT_033918	NT_033919	NT_033893	NT_024037	NT_030075	NT_033890	NT_024064
NT_030070	NT_008769	NT_033229	NT_030059	NT_008818	NT_033221	NT_031855	NT_031856
NT_008902	NT_030764	NT_027097	NT_024086	NT_025835	NT_033224	NT_033225	NT_024040
NT_017795	NT_028298

NT_008818

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_008818	AC067746	118201954	1	none	none	1 pink	3 confirm	0 weak 3 green
NT_008818	AL607044	118207084	2	none	none	none	5 confirm	81457 strong
NT_008818	AL589949	118411512	2	none	none	none	10 confirm	925 weak 1 green
NT_008818	AC012578	118483624	1	none	none	none	10 confirm	23659 strong 1 green
NT_008818	AL390203	118613870	2	none	none	1 pink	17 confirm	2000 strong 1 green
NT_008818	AL607076	118785841	3	none	none	none	2 confirm	20502 strong
NT_008818	AC011636	118845185	1	none	none	none	6 confirm	133724 strong
NT_008818	AC035138	118895694	1	2 pink	none	1 pink	3 confirm	0 weak
NT_008818	AL359094	118952528	3	1 pink	1 pink	2 pink	2 confirm	1995 medium 1 yellow
NT_008818	AL390920	119070146	3	none	none	1 pink	7 confirm	1991 medium 2 yellow
NT_008818	AL590372	119238519	3	none	none	none	0 confirm	0 weak
NT_008818	AL157711	119248460	3	1 pink	2 pink	4 pink	20 confirm	1987 medium 1 yellow
NT_008818	AL355316	119422359	3	2 pink	1 pink	2 pink	23 confirm	2000 strong
NT_008818	AL391005	119537319	3	none	1 pink	1 pink	31 confirm	2000 strong
NT_008818	AL157393	119701788	3	1 pink	1 pink	2 pink	20 confirm	1997 medium
NT_008818	AL158166	119835332	3	none	1 pink	2 pink	26 confirm	2000 strong
NT_008818	AL390236	119945184	3	none	3 pink	9 pink	18 confirm	2000 strong 1 yellow
NT_008818	AL355529	120167741	3	1 pink	none	1 pink	13 confirm	1998 medium 2 yellow
NT_008818	AL390763	120204707	3	none	none	none	16 confirm	2000 strong 1 yellow
NT_008818	AL358092	120364751	3	none	none	none	24 confirm	2000 strong
NT_008818	AL160174	120466567	3	none	none	none	16 confirm	1999 medium
NT_008818	AL157897	120754749	3	1 pink	1 pink	none	28 confirm	2000 strong
NT_008818	AL138897	120766451	3	none	1 pink	none	13 confirm	2000 strong
NT_008818	AL355537	120936350	3	1 pink	1 pink	2 pink	30 confirm	100 weak 1 yellow
NT_008818	AL353722	121012858	3	none	none	none	3 confirm	0 weak 1 yellow

NT_008818 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_008818	AL139820	121047281	3	none	none	none	19 confirm	0 weak 1 yellow
NT_008818	AL391869	121117520	3	2 pink	2 pink	2 pink	18 confirm 2 red	0 weak 2 yellow
NT_008818	AL645642	121267502	3	none	none	none	13 confirm 2 red	2000 strong 1 red 2 yellow
NT_008818	AL359508	121321899	3	none	none	none	4 confirm	0 weak 1 red 2 yellow
NT_008818	AL355531	121380197	3	none	none	1 pink	16 confirm 7 red	1992 medium 1 red 2 yellow
NT_008818	AL353725	121592085	3	none	none	none	7 confirm 3 red	2000 strong 1 yellow
NT_008818	AL157832	121651609	3	none	none	none	18 confirm	2000 strong 1 yellow
NT_008818	AL354950	121779801	3	none	none	4 pink	18 confirm	1997 medium
NT_008818	AL139408	121943824	3	none	none	none	5 confirm	1921 medium
NT_008818	AL139123	122076955	3	1 pink	1 pink	4 pink	16 confirm	100 weak
NT_008818	AL161648	122195062	3	none	1 pink	1 pink	8 confirm	100 weak 1 green
NT_008818	AL157712	122242039	3	none	none	none	21 confirm	43804 strong 1 green 1 yellow
NT_008818	AL355500	122371151	3	none	1 pink	3 pink	9 confirm	2000 strong 1 green 1 yellow
NT_008818	AC016816	122483845	3	none	none	none	12 confirm	90149 strong
NT_008818	AC027669	122683098	3	1 pink	none	none	14 confirm	0 weak
NT_008818	AC023387	122750485	1	none	none	none	0 confirm	0 weak 3 green 1 yellow
NT_008818	-			0 yellow	0 yellow	0 yellow