Chromsome Reports

Chromosome 10 - Summary - Single Contig

Description of this page

Cell color code:

Color	Genetic, YAC, RH	BAC End Pairs	Clone Overlaps
White	No markers placed	All clone bridges in same contig	Best overlap with succeeding clone or no overlaps
Blue	Marker consistent with alignment of STS map	Clone bridges two adjacent contigs
Green	Marker slightly inconsistent with alignment of STS map	Clone bridges close contigs	Overlap with non-adjacent clone in same contig
Pink	Marker inconsistent with STS map, same chromosome	Mulitple clones bridge to distant contig, same chromosome	Overlap with clone on different contig, same chromosome
Red	Marker inconsistent with STS map, different chromosome	Mulitple clones bridge to contig on different chromosome	Overlap with clone on different chromosome
Yellow	Marker not placed on any accession in contig, but alignment with STS map indicates it is in contig		Overlap with clone not used in assembly

NT_024115	NT_024081	NT_033983	NT_033894	NT_033916	NT_008705	NT_033921	NT_033986
NT_033892	NT_033226	NT_033223	NT_033227	NT_033912	NT_033982	NT_033988	NT_033896
NT_024133	NT_033987	NT_033985	NT_031847	NT_030066	NT_030772	NT_033228	NT_008646
NT_017696	NT_031860	NT_033898	NT_033920	NT_008748	NT_033222	NT_033990	NT_024085
NT_033984	NT_008797	NT_033897	NT_008583	NT_033220	NT_033891	NT_033895	NT_033917
NT_033989	NT_033918	NT_033919	NT_033893	NT_024037	NT_030075	NT_033890	NT_024064
NT_030070	NT_008769	NT_033229	NT_030059	NT_008818	NT_033221	NT_031855	NT_031856
NT_008902	NT_030764	NT_027097	NT_024086	NT_025835	NT_033224	NT_033225	NT_024040
NT_017795	NT_028298

NT_024115

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_024115	AL713922	1	1	none	none	none	9 confirm 2 red	52777 strong 1 red 1 yellow
NT_024115	AC022391	66787	1	2 blue	none	2 blue	10 confirm 1 red	48958 strong 1 yellow
NT_024115	AL589988	222618	2	1 blue	none	4 blue	16 confirm 2 red	78176 strong
NT_024115	AL603831	284614	1	1 blue	none	8 blue	12 confirm	2000 strong
NT_024115	AL669841	416557	3	none	none	none	3 confirm	1994 medium
NT_024115	AL359957	444434	1	none	none	none	14 confirm	49027 strong 1 yellow
NT_024115	AL358216	589823	2	none	1 blue	none	14 confirm	74011 strong 1 yellow
NT_024115	AL157709	722978	3	2 blue	2 blue	8 blue	9 confirm	2000 strong
NT_024115	AL359878	767846	1	none	none	1 blue	24 confirm	40195 strong
NT_024115	AC022536	910030	1	none	2 blue	15 blue	22 confirm	2000 strong 1 yellow
NT_024115	AL607085	1071673	3	none	1 blue	3 blue	2 confirm	2000 strong
NT_024115	AC037458	1084802	1	none	none	1 blue	14 confirm	1992 medium
NT_024115	AL392083	1218376	3	none	none	none	4 confirm	1999 medium
NT_024115	AL442069	1264536	3	none	none	none	0 confirm	1984 medium
NT_024115	AL513304	1412102	2	1 blue	1 blue	2 blue	8 confirm	2000 strong 1 yellow
NT_024115	AL450386	1494680	3	2 blue	1 blue	2 blue	2 confirm	2000 strong 1 yellow
NT_024115	AC026224	1532977	1	2 blue	none	none	6 confirm	43752 strong
NT_024115	AL499582	1640533	3	none	none	2 blue	12 confirm	1999 medium 1 yellow
NT_024115	AL355597	1843085	3	2 blue	1 blue	none	9 confirm	2000 strong
NT_024115	AL441943	1909405	3	none	none	none	14 confirm	2000 strong
NT_024115	AL354747	2129648	3	3 blue	2 blue	2 blue	7 confirm	2000 strong
NT_024115	AL139818	2193254	3	none	1 blue	none	13 confirm	1995 medium
NT_024115	AC024908	2445804	3	1 blue	1 blue	none	21 confirm	34591 strong 1 yellow
NT_024115	AC060235	2450722	1	none	none	1 blue	10 confirm	28085 strong 1 yellow
NT_024115	AL450464	2546423	3	none	none	none	6 confirm	0 weak 1 yellow

NT_024115 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_024115	AL355361	2585531	3	2 blue	1 blue	1 blue	27 confirm	31749 strong
NT_024115	AC026396	2771869	3	1 blue	1 blue	none	23 confirm	1987 medium
NT_024115	AL590671	2895574	3	none	none	none	5 confirm	1994 medium
NT_024115	AC022388	2933159	1	none	none	none	13 confirm	0 weak
NT_024115	AC013756	3027109	1	none	none	none	1 confirm	0 weak 1 green 1 yellow
NT_024115	AL451164	3032455	3	none	none	3 blue	20 confirm	1983 weak
NT_024115	AL139280	3195525	3	none	none	none	2 confirm	1996 medium
NT_024115	AL356433	3238987	3	none	none	4 blue	15 confirm	0 weak 1 yellow
NT_024115	AL357833	3396688	3	none	none	none	17 confirm	14665 strong 1 green 1 yellow
NT_024115	AL607063	3573251	2	none	none	none	5 confirm	79667 strong 1 yellow
NT_024115	AL450322	3622849	3	none	none	8 blue	10 confirm	2000 strong 1 yellow
NT_024115	AL513303	3717011	3	none	1 blue	none	19 confirm	2000 strong 1 yellow
NT_024115	AL139816	3902844	3	none	none	none	4 confirm	66872 strong
NT_024115	AC025822	3995191	1	none	none	none	10 confirm 13 blue	0 weak
NT_024115	AC025102	4001815	1	none	none	none	0 confirm 15 red	0 weak 3 red
NT_024115	-			3 yellow	0 yellow	6 yellow