Chromsome Reports

Chromosome 10 - Summary - Single Contig

Description of this page

Cell color code:

Color	Genetic, YAC, RH	BAC End Pairs	Clone Overlaps
White	No markers placed	All clone bridges in same contig	Best overlap with succeeding clone or no overlaps
Blue	Marker consistent with alignment of STS map	Clone bridges two adjacent contigs
Green	Marker slightly inconsistent with alignment of STS map	Clone bridges close contigs	Overlap with non-adjacent clone in same contig
Pink	Marker inconsistent with STS map, same chromosome	Mulitple clones bridge to distant contig, same chromosome	Overlap with clone on different contig, same chromosome
Red	Marker inconsistent with STS map, different chromosome	Mulitple clones bridge to contig on different chromosome	Overlap with clone on different chromosome
Yellow	Marker not placed on any accession in contig, but alignment with STS map indicates it is in contig		Overlap with clone not used in assembly

NT_024115	NT_024081	NT_033983	NT_033894	NT_033916	NT_008705	NT_033921	NT_033986
NT_033892	NT_033226	NT_033223	NT_033227	NT_033912	NT_033982	NT_033988	NT_033896
NT_024133	NT_033987	NT_033985	NT_031847	NT_030066	NT_030772	NT_033228	NT_008646
NT_017696	NT_031860	NT_033898	NT_033920	NT_008748	NT_033222	NT_033990	NT_024085
NT_033984	NT_008797	NT_033897	NT_008583	NT_033220	NT_033891	NT_033895	NT_033917
NT_033989	NT_033918	NT_033919	NT_033893	NT_024037	NT_030075	NT_033890	NT_024064
NT_030070	NT_008769	NT_033229	NT_030059	NT_008818	NT_033221	NT_031855	NT_031856
NT_008902	NT_030764	NT_027097	NT_024086	NT_025835	NT_033224	NT_033225	NT_024040
NT_017795	NT_028298

NT_008769

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_008769	AL683834	90560883	1	2 blue 1 green	2 blue	none	5 confirm 6 pink	75058 strong 1 green
NT_008769	AC021034	90294047	1	none	1 blue	1 blue	3 confirm 1 blue 5 pink	0 weak 1 green
NT_008769	AC026227	90339733	1	none	none	1 blue	4 confirm	21831 strong 1 green
NT_008769	AC021042	94886045	1	1 blue	none	1 blue	10 confirm	0 weak 3 green 1 yellow
NT_008769	AC079955	90386376	3	none	none	none	2 confirm 10 pink	0 weak 1 green 1 yellow
NT_008769	AL136982	90728702	3	none	none	9 blue	10 confirm 1 blue 29 pink	20292 strong 1 yellow
NT_008769	AL645992	90911661	2	none	none	5 blue 4 pink	21 confirm 35 pink	98162 strong
NT_008769	AL157893	91054569	2	none	none	5 blue 2 pink	12 confirm 26 pink	63442 strong
NT_008769	AL645612	91118677	2	none	none	none	3 confirm 3 pink	73870 strong
NT_008769	AL355334	91139416	3	none	none	7 blue 4 pink	25 confirm 37 pink	0 weak
NT_008769	AL138767	91312806	3	none	none	1 blue	16 confirm 3 pink	0 weak 1 yellow
NT_008769	AL133327	91433036	3	2 blue	2 blue	12 blue	12 confirm	2000 strong 1 yellow
NT_008769	AC022016	91604578	3	1 blue	1 blue	6 blue	23 confirm	97972 strong 1 yellow
NT_008769	AC063965	91708010	3	none	none	6 blue	12 confirm	1998 medium 1 yellow
NT_008769	AL356142	91811524	3	none	none	none	4 confirm	0 weak 1 yellow
NT_008769	AL356073	91994501	3	1 blue	1 blue	2 blue	16 confirm	1997 medium 1 yellow
NT_008769	AL353149	92016459	3	none	none	1 blue	6 confirm	0 weak 2 yellow
NT_008769	AL365185	92078918	3	none	none	none	11 confirm	1996 medium 3 yellow
NT_008769	AL139406	92227553	3	none	1 blue	1 blue	17 confirm	2000 strong 1 yellow
NT_008769	AL358532	92410151	3	none	none	2 blue	27 confirm	0 weak 2 yellow
NT_008769	AL353113	92569977	3	none	none	2 blue	10 confirm	0 weak 2 yellow
NT_008769	AL157394	92654936	3	1 blue	3 blue	9 blue	23 confirm	2000 strong 1 yellow
NT_008769	AL391318	92815112	3	1 blue	1 blue	1 blue	6 confirm	1996 medium
NT_008769	AL513533	92840073	1	none	none	4 blue	10 confirm	36268 strong
NT_008769	AL353751	92983960	2	none	none	9 blue	14 confirm	0 weak 1 yellow

NT_008769 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_008769	AL353146	93249008	3	1 blue	1 blue	4 blue	14 confirm	1993 medium 1 yellow
NT_008769	AL355342	93278251	3	none	none	none	9 confirm	1999 medium
NT_008769	AL157400	93330024	3	none	none	8 blue	22 confirm	2000 strong
NT_008769	AL157389	93476420	3	none	1 blue	2 blue	26 confirm	2000 strong
NT_008769	AL138924	93608687	3	none	none	none	5 confirm	2000 strong
NT_008769	AL390206	93660710	3	none	none	1 red	24 confirm	1998 medium
NT_008769	AL139340	93771749	3	none	1 blue	1 blue	22 confirm	7120 strong 1 yellow
NT_008769	AL157836	93957065	3	none	none	2 blue	17 confirm	1998 medium 1 yellow
NT_008769	AL359919	94125327	3	none	1 blue	1 blue	7 confirm	1996 medium
NT_008769	AL391704	94189386	3	none	2 blue	2 blue	27 confirm	0 weak 1 yellow
NT_008769	AL390862	94415654	3	1 blue	2 blue	1 blue	23 confirm	0 weak 1 yellow
NT_008769	AL360011	94602411	3	1 blue	1 blue	4 blue	21 confirm	100 weak 1 yellow
NT_008769	AL590622	94634193	3	none	none	7 blue	7 confirm	0 weak
NT_008769	AL365434	94696957	3	1 blue	none	none	15 confirm	66622 strong 2 green 1 yellow
NT_008769	AC011170	94899886	1	none	none	none	3 confirm	5303 medium 1 green 1 yellow
NT_008769	AC074094	94937453	1	none	none	none	0 confirm	0 weak 2 green 1 yellow
NT_008769	AC023902	94968010	3	none	none	1 blue	23 confirm	0 weak 1 green
NT_008769	AL161798	95151116	3	none	none	3 blue	26 confirm	2000 strong 2 yellow
NT_008769	AL359986	95285554	2	none	none	4 blue	28 confirm	2000 medium 2 yellow
NT_008769	AL359707	95456673	3	none	2 blue 1 red	4 blue	23 confirm	1643 weak
NT_008769	AL359198	95596758	3	none	none	2 blue	11 confirm	2000 strong 1 yellow
NT_008769	AL365398	95711100	3	none	none	2 blue	11 confirm	1822 weak 1 yellow
NT_008769	AL158040	95804398	3	none	none	3 blue	15 confirm	0 weak 2 yellow
NT_008769	AL161652	96067580	3	1 blue	none	2 blue	15 confirm	1999 medium 1 yellow
NT_008769	AL356128	96329471	3	1 blue	2 blue	7 blue	11 confirm	2000 strong

NT_008769 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_008769	AL360222	96361752	3	none	none	1 blue	0 confirm	1992 medium
NT_008769	AL590080	96443906	3	1 blue	1 blue	1 blue	3 confirm	1998 medium
NT_008769	AL392103	96574820	3	none	none	none	11 confirm	1885 weak
NT_008769	AL157705	96697907	3	none	none	1 blue	8 confirm	1738 weak
NT_008769	AL358613	96772670	3	none	none	2 blue	9 confirm	2000 strong
NT_008769	AL159171	96802817	3	none	none	none	19 confirm	2000 strong
NT_008769	AL365364	96968962	3	none	none	none	17 confirm	2000 strong 2 yellow
NT_008769	AL360229	97148666	3	1 blue	1 blue	1 blue	12 confirm	2000 strong 2 yellow
NT_008769	AL356214	97274223	3	1 blue	1 blue	6 blue	24 confirm	100 weak 1 yellow
NT_008769	AL157396	97368116	3	none	none	3 blue	14 confirm	100 weak
NT_008769	AL358154	97496812	3	none	1 blue	1 blue	11 confirm	2000 strong
NT_008769	AL138923	97561900	3	1 blue	none	2 blue	12 confirm	1999 medium 1 yellow
NT_008769	AL365510	97636997	3	none	none	5 blue	24 confirm	0 weak 2 yellow
NT_008769	AL139118	97815186	3	none	1 blue	1 blue	4 confirm	0 weak 1 yellow
NT_008769	AL389885	97924851	3	2 blue	3 blue	1 blue	24 confirm	2000 strong 1 yellow
NT_008769	AL139124	97958705	3	none	1 blue	1 blue	18 confirm	2000 strong
NT_008769	AL355341	98049981	3	none	none	1 blue	19 confirm	2000 strong
NT_008769	AL138759	98385009	3	1 blue	none	8 blue	23 confirm	2000 strong
NT_008769	AL157835	98392450	3	none	none	none	2 confirm	2000 strong
NT_008769	AL583836	98400092	3	none	none	1 blue	21 confirm	0 weak
NT_008769	AL133513	98513269	3	none	none	4 blue	22 confirm	1999 medium
NT_008769	AL359672	98651013	2	none	none	7 blue	18 confirm	2000 strong
NT_008769	AL157834	98792193	3	none	none	1 blue	21 confirm	0 weak 1 yellow
NT_008769	AL160288	98980587	3	none	none	none	8 confirm	2000 strong 1 yellow
NT_008769	AL158165	99098946	3	1 blue	1 blue	8 blue	20 confirm	1997 medium

NT_008769 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_008769	AL157890	99194949	3	none	none	2 blue	14 confirm	1999 medium
NT_008769	AL356632	99288630	3	none	1 blue	4 blue	24 confirm	1999 medium
NT_008769	AL365273	99449796	1	none	none	9 blue	16 confirm	2000 strong
NT_008769	AL513355	99639833	3	none	1 blue	1 blue	12 confirm	2000 strong
NT_008769	AL356155	99753045	3	none	1 blue	1 blue	9 confirm	1998 medium
NT_008769	AC021037	99951978	3	1 blue	1 blue	4 blue	22 confirm	2000 strong 1 green
NT_008769	AL391057	100001999	3	none	none	none	1 confirm	2000 strong
NT_008769	AL136181	100003999	3	none	1 blue	6 blue	18 confirm	113320 strong
NT_008769	AL391136	100148908	2	none	1 blue	1 blue	4 confirm	2000 strong
NT_008769	AL138765	100326006	3	2 blue	3 blue	7 blue	13 confirm	2000 strong
NT_008769	AL591364	100373916	3	none	none	none	3 confirm	1996 medium
NT_008769	AL358235	100393812	3	none	1 blue	1 blue	3 confirm	1997 medium
NT_008769	AL162502	100498319	3	none	none	4 blue	15 confirm	1999 medium 1 yellow
NT_008769	AL442123	100659938	3	none	2 blue	6 blue	14 confirm	0 weak
NT_008769	AL512424	100906188	2	1 blue	none	4 blue	21 confirm	0 weak 2 yellow
NT_008769	AL359385	100925108	3	none	none	1 blue	7 confirm 1 pink	2000 strong 3 yellow
NT_008769	AL355490	101034396	3	1 blue	1 blue 1 red	14 blue	5 confirm 6 pink	0 weak 1 yellow
NT_008769	-			2 yellow	4 yellow	45 yellow