Chromsome Reports

Chromosome 10 - Summary - Single Contig

Description of this page

Cell color code:

Color	Genetic, YAC, RH	BAC End Pairs	Clone Overlaps
White	No markers placed	All clone bridges in same contig	Best overlap with succeeding clone or no overlaps
Blue	Marker consistent with alignment of STS map	Clone bridges two adjacent contigs
Green	Marker slightly inconsistent with alignment of STS map	Clone bridges close contigs	Overlap with non-adjacent clone in same contig
Pink	Marker inconsistent with STS map, same chromosome	Mulitple clones bridge to distant contig, same chromosome	Overlap with clone on different contig, same chromosome
Red	Marker inconsistent with STS map, different chromosome	Mulitple clones bridge to contig on different chromosome	Overlap with clone on different chromosome
Yellow	Marker not placed on any accession in contig, but alignment with STS map indicates it is in contig		Overlap with clone not used in assembly

NT_024115	NT_024081	NT_033983	NT_033894	NT_033916	NT_008705	NT_033921	NT_033986
NT_033892	NT_033226	NT_033223	NT_033227	NT_033912	NT_033982	NT_033988	NT_033896
NT_024133	NT_033987	NT_033985	NT_031847	NT_030066	NT_030772	NT_033228	NT_008646
NT_017696	NT_031860	NT_033898	NT_033920	NT_008748	NT_033222	NT_033990	NT_024085
NT_033984	NT_008797	NT_033897	NT_008583	NT_033220	NT_033891	NT_033895	NT_033917
NT_033989	NT_033918	NT_033919	NT_033893	NT_024037	NT_030075	NT_033890	NT_024064
NT_030070	NT_008769	NT_033229	NT_030059	NT_008818	NT_033221	NT_031855	NT_031856
NT_008902	NT_030764	NT_027097	NT_024086	NT_025835	NT_033224	NT_033225	NT_024040
NT_017795	NT_028298

NT_033892

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_033892	AL158209	21657076	3	none	1 blue	none	2 confirm 4 blue	71054 strong
NT_033892	AL358780	21718025	1	none	none	2 blue	10 confirm	23720 strong
NT_033892	AL161799	21937694	3	1 blue	1 blue	4 blue 1 green	19 confirm	1999 medium
NT_033892	AL357372	22015919	3	none	none	4 blue	3 confirm	0 weak
NT_033892	AL359697	22202033	3	1 blue	none	8 blue	15 confirm	2000 strong 2 yellow
NT_033892	AL445431	22227340	3	none	none	2 blue	15 confirm	2000 strong 1 yellow
NT_033892	AL596115	22363993	3	none	none	none	6 confirm	1994 medium
NT_033892	AL157831	22391250	3	none	none	none	16 confirm	45055 strong
NT_033892	AL158211	22565827	1	none	1 blue	9 blue	13 confirm	16111 strong 1 yellow
NT_033892	AL513128	22699995	3	none	1 blue	12 blue	23 confirm	2000 strong 1 yellow
NT_033892	AL157707	22884680	3	none	1 blue	none	11 confirm	0 weak 1 yellow
NT_033892	AL390318	22965992	3	2 blue 1 green	2 blue	2 blue	20 confirm	2000 strong
NT_033892	AL359375	23095070	3	none	none	none	23 confirm	106175 strong
NT_033892	AC079269	23219916	3	none	none	none	17 confirm	1993 medium 2 yellow
NT_033892	AL139815	23309738	3	none	none	1 blue	14 confirm	0 weak 2 yellow
NT_033892	AL139281	23424063	2	2 blue	3 blue	5 blue	16 confirm	103170 strong 2 yellow
NT_033892	AL592296	23633304	2	1 blue	none	1 blue	11 confirm	19166 strong
NT_033892	AL606469	23633468	2	none	none	none	11 confirm	59868 strong 1 yellow
NT_033892	AL512603	23775675	1	1 blue	2 blue	2 blue	16 confirm	3264 strong 2 yellow
NT_033892	AL353650	23932634	3	none	none	none	10 confirm	100 weak 1 yellow
NT_033892	AL355977	24183094	1	1 blue	1 blue	1 blue	19 confirm	2000 strong
NT_033892	AL391499	24188679	3	none	none	none	17 confirm 7 red	2000 strong
NT_033892	AL356477	24331429	3	none	none	none	4 confirm	2000 strong
NT_033892	AL157781	24358450	3	none	none	none	17 confirm 1 red	3421 strong
NT_033892	AC063961	24501242	3	2 blue	3 blue	1 blue	12 confirm 2 red	63345 strong 1 yellow

NT_033892 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_033892	AL356113	24627991	3	3 blue	3 blue	4 blue	18 confirm	2000 strong 1 yellow
NT_033892	AL353583	24786180	3	1 blue	none	1 blue	22 confirm	1998 medium
NT_033892	AL392104	24863677	3	none	1 blue	2 blue	20 confirm	2000 strong
NT_033892	AL355979	25028320	3	none	none	2 blue	6 confirm	1997 medium
NT_033892	AL157385	25132943	3	none	none	3 blue	12 confirm	2000 strong
NT_033892	AL512598	25261590	3	none	none	1 blue	15 confirm	2000 strong
NT_033892	AL139821	25399081	3	none	none	none	18 confirm	12116 strong 2 yellow
NT_033892	AL354976	25667073	3	1 blue	1 blue	2 blue	16 confirm	0 weak 3 yellow
NT_033892	AL161654	25676409	3	none	none	none	18 confirm	0 weak 2 yellow
NT_033892	AL355587	25833640	3	none	none	1 green	13 confirm 1 blue	0 weak 1 yellow
NT_033892	AC018509	25961679	3	none	none	1 green	4 confirm 13 blue	79583 strong 1 pink 1 yellow
NT_033892	AL591114	26134658	1	1 blue	1 blue	none	0 confirm 3 blue	0 weak 2 pink 1 yellow
NT_033892	-			0 yellow	0 yellow	5 yellow