Chromsome Reports

Chromosome 10 - Summary - Single Contig

Description of this page

Cell color code:

Color	Genetic, YAC, RH	BAC End Pairs	Clone Overlaps
White	No markers placed	All clone bridges in same contig	Best overlap with succeeding clone or no overlaps
Blue	Marker consistent with alignment of STS map	Clone bridges two adjacent contigs
Green	Marker slightly inconsistent with alignment of STS map	Clone bridges close contigs	Overlap with non-adjacent clone in same contig
Pink	Marker inconsistent with STS map, same chromosome	Mulitple clones bridge to distant contig, same chromosome	Overlap with clone on different contig, same chromosome
Red	Marker inconsistent with STS map, different chromosome	Mulitple clones bridge to contig on different chromosome	Overlap with clone on different chromosome
Yellow	Marker not placed on any accession in contig, but alignment with STS map indicates it is in contig		Overlap with clone not used in assembly

NT_024115	NT_024081	NT_033983	NT_033894	NT_033916	NT_008705	NT_033921	NT_033986
NT_033892	NT_033226	NT_033223	NT_033227	NT_033912	NT_033982	NT_033988	NT_033896
NT_024133	NT_033987	NT_033985	NT_031847	NT_030066	NT_030772	NT_033228	NT_008646
NT_017696	NT_031860	NT_033898	NT_033920	NT_008748	NT_033222	NT_033990	NT_024085
NT_033984	NT_008797	NT_033897	NT_008583	NT_033220	NT_033891	NT_033895	NT_033917
NT_033989	NT_033918	NT_033919	NT_033893	NT_024037	NT_030075	NT_033890	NT_024064
NT_030070	NT_008769	NT_033229	NT_030059	NT_008818	NT_033221	NT_031855	NT_031856
NT_008902	NT_030764	NT_027097	NT_024086	NT_025835	NT_033224	NT_033225	NT_024040
NT_017795	NT_028298

NT_008705

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_008705	AL512783	12852282	3	none	1 green 1 red	4 blue 1 green	13 confirm 3 blue	1998 medium 1 yellow
NT_008705	AL353586	12977274	3	3 blue	none	7 blue 3 green	9 confirm	0 weak 2 yellow
NT_008705	AL596124	13049634	3	none	none	none	7 confirm	0 weak 2 yellow
NT_008705	AL355355	13077639	3	none	none	6 blue 1 green	24 confirm	2000 strong 2 yellow
NT_008705	AL138764	13271842	3	none	none	4 blue 2 green	10 confirm	1998 medium
NT_008705	AL355870	13424614	3	none	none	none	15 confirm	2000 strong
NT_008705	AL359172	13523176	3	none	none	1 blue	0 confirm	2000 strong
NT_008705	AL590677	13658573	3	1 blue	1 blue	1 blue	16 confirm	1992 medium
NT_008705	AL157392	13848976	3	1 blue	3 blue	14 blue	15 confirm	100 weak
NT_008705	AL512660	13851712	3	none	1 blue	1 blue	2 confirm	100 weak
NT_008705	AL365495	13888428	2	2 blue	1 blue	4 blue	18 confirm	29274 strong 1 green 1 yellow
NT_008705	AC044781	14043511	1	none	none	1 blue	13 confirm	126017 strong 1 green 1 yellow
NT_008705	AC021690	14168409	1	none	none	none	1 confirm	42962 strong 1 green
NT_008705	AC021349	14173440	1	none	none	none	0 confirm	0 weak 2 green 1 yellow
NT_008705	AL607075	14176166	3	none	none	none	2 confirm	0 weak
NT_008705	AL157896	14188552	3	none	none	1 blue	9 confirm	1994 medium 1 green
NT_008705	AC069025	14370165	3	1 blue	1 blue	5 blue 1 pink	21 confirm	13942 strong 1 yellow
NT_008705	AL139405	14625964	3	1 blue	3 blue	4 blue	19 confirm	2000 strong 1 yellow
NT_008705	AL157706	14627687	3	none	1 blue	6 blue	18 confirm	2000 strong
NT_008705	AL158168	14744303	3	none	none	none	23 confirm	104126 strong 1 yellow
NT_008705	AC069544	14899543	3	none	none	7 blue 1 red	11 confirm	0 weak 1 yellow
NT_008705	AL360083	15010039	3	none	none	6 blue	8 confirm	0 weak
NT_008705	AL157391	15102998	3	none	none	none	6 confirm	2000 strong
NT_008705	AL590365	15247561	3	1 blue	none	3 blue	10 confirm	2002 strong
NT_008705	AL607028	15340977	3	none	1 blue	none	14 confirm	2000 strong

NT_008705 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_008705	AL139338	15457131	3	none	none	none	13 confirm	0 weak 1 yellow
NT_008705	AL590636	15567392	3	none	1 blue	1 blue	18 confirm	2000 strong 1 yellow
NT_008705	AL359645	15744238	3	1 blue	2 blue	1 blue	17 confirm	0 weak 1 yellow
NT_008705	AL590439	15854378	3	none	none	2 blue	18 confirm	100 weak
NT_008705	AL358033	16060697	3	1 blue	1 blue	1 blue	9 confirm	2000 strong
NT_008705	AL359816	16123100	3	none	none	none	14 confirm	2000 strong
NT_008705	AL358978	16223201	3	none	none	none	10 confirm	2000 strong
NT_008705	AL355339	16305425	3	none	none	none	15 confirm	2000 strong 1 yellow
NT_008705	AL360230	16585538	3	1 blue	1 blue	3 blue 1 pink	16 confirm	0 weak 1 yellow
NT_008705	AL353576	16648434	3	1 blue	1 blue	none	11 confirm	0 weak 4 yellow
NT_008705	AC073367	16769624	3	2 blue	2 blue	6 blue	13 confirm	4652 strong 6 yellow
NT_008705	AL365215	16844568	3	none	none	1 blue 1 pink	18 confirm	0 weak 1 green 1 yellow
NT_008705	AL596445	17024619	3	none	none	none	4 confirm	12720 strong
NT_008705	AC053510	17035341	1	none	none	none	2 confirm	100183 strong 1 green 1 yellow
NT_008705	AC024605	17067266	1	none	none	none	11 confirm	85713 strong 1 green
NT_008705	AC067747	17134524	3	none	none	1 blue	25 confirm	87745 strong
NT_008705	AL133415	17281802	3	none	1 blue	3 blue	10 confirm	1999 medium 1 green 1 yellow
NT_008705	AL158164	17391984	3	1 blue	1 blue	7 blue	24 confirm	2000 strong 1 yellow
NT_008705	AL160289	17523255	3	none	none	1 blue	10 confirm	1999 medium
NT_008705	AL391334	17584173	3	none	none	none	16 confirm	0 weak
NT_008705	AC069542	17679604	3	none	none	6 blue 1 green	19 confirm	59616 strong 2 yellow
NT_008705	AL139238	17844117	2	none	none	2 blue	14 confirm	86147 strong 2 yellow
NT_008705	AC069023	17948142	1	none	1 blue	3 blue	14 confirm	102672 strong 1 green 2 yellow
NT_008705	AC011982	17948149	1	none	none	1 blue	3 confirm	91379 strong 1 yellow
NT_008705	AC015944	17971644	1	none	none	none	2 confirm	11444 strong 1 green 1 yellow

NT_008705 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_008705	AL590111	18070385	3	none	none	none	8 confirm	0 weak 1 yellow
NT_008705	AL360231	18111454	3	none	none	1 blue	35 confirm	2000 strong
NT_008705	AL353603	18263700	3	none	none	1 blue	6 confirm	1991 medium
NT_008705	AL390783	18292225	2	none	none	2 blue 1 pink	25 confirm	1999 medium 1 yellow
NT_008705	AL139814	18540589	3	1 blue	1 blue	5 blue	14 confirm	2000 strong
NT_008705	AL450364	18587667	3	none	none	none	4 confirm	2000 strong
NT_008705	AL450384	18659419	3	1 blue	1 blue	5 blue 1 green	19 confirm	2000 strong 2 yellow
NT_008705	AL512641	18746327	3	none	none	none	22 confirm	0 weak 2 yellow
NT_008705	AL589882	18917015	3	none	none	none	9 confirm	2000 strong 1 yellow
NT_008705	AL357520	18984281	3	none	none	1 blue	22 confirm	1999 medium 1 yellow
NT_008705	AL450470	19161223	3	none	none	none	5 confirm	2000 strong
NT_008705	AL391992	19233565	3	2 blue	1 blue	1 blue	11 confirm	0 weak 1 yellow
NT_008705	AL590378	19378659	3	1 blue	none	none	20 confirm 5 blue 1 green 1 red	0 weak 1 pink 2 yellow
NT_008705	-			0 yellow	0 yellow	5 yellow