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  Chromosome 10 - Summary - Single Contig
 
Description of this page Main Reports Page Main Assembly Page Main Summary Page Whole Chromosome Single Contigs

Cell color code:

ColorGenetic, YAC, RHBAC End PairsClone Overlaps
WhiteNo markers placedAll clone bridges in same contigBest overlap with succeeding clone or no overlaps
BlueMarker consistent with alignment of STS mapClone bridges two adjacent contigs 
GreenMarker slightly inconsistent with alignment of STS mapClone bridges close contigsOverlap with non-adjacent clone in same contig
PinkMarker inconsistent with STS map, same chromosomeMulitple clones bridge to distant contig, same chromosomeOverlap with clone on different contig, same chromosome
RedMarker inconsistent with STS map, different chromosomeMulitple clones bridge to contig on different chromosomeOverlap with clone on different chromosome
YellowMarker not placed on any accession in contig, but alignment with STS map indicates it is in contig Overlap with clone not used in assembly

NT_024115 NT_024081 NT_033983 NT_033894 NT_033916 NT_008705 NT_033921 NT_033986
NT_033892 NT_033226 NT_033223 NT_033227 NT_033912 NT_033982 NT_033988 NT_033896
NT_024133 NT_033987 NT_033985 NT_031847 NT_030066 NT_030772 NT_033228 NT_008646
NT_017696 NT_031860 NT_033898 NT_033920 NT_008748 NT_033222 NT_033990 NT_024085
NT_033984 NT_008797 NT_033897 NT_008583 NT_033220 NT_033891 NT_033895 NT_033917
NT_033989 NT_033918 NT_033919 NT_033893 NT_024037 NT_030075 NT_033890 NT_024064
NT_030070 NT_008769 NT_033229 NT_030059 NT_008818 NT_033221 NT_031855 NT_031856
NT_008902 NT_030764 NT_027097 NT_024086 NT_025835 NT_033224 NT_033225 NT_024040
NT_017795 NT_028298


  NT_033890
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_033890AC0695378174316312 blue
 1 green
1 pink
1 red
 1 green
1 pink
 1 confirm
5 pink
 0 weak
1 green
2 pink
NT_033890AC023291817082151none none none 0 confirm
 0 weak
2 green
NT_033890AC010163818157993none none 1 blue
 14 confirm
12 pink
 52450 strong
1 green
1 yellow
NT_033890AC0125608200487132 blue
 none none 14 confirm
 1991 medium
3 yellow
NT_033890AL583852820912933none none 1 blue
 7 confirm
 54241 strong
5 yellow
NT_033890AC016820821460033none none 1 pink
 15 confirm
 0 weak
6 yellow
NT_033890AC0134198231642411 green
 none 1 blue
 9 confirm
 62009 strong
1 green
4 yellow
NT_033890AC010195823548891none none none 0 confirm
 108256 strong
1 yellow
NT_033890AL358034823674313none none none 23 confirm
 0 weak
1 green
NT_033890AL4503988250984531 blue
 none 1 blue
1 pink
 1 confirm
 0 weak
1 green
NT_033890AL3567538265068432 blue
 none 1 pink
 20 confirm
 0 weak
2 green
NT_033890AL358782827103273none none none 1 confirm
 0 weak
1 green
1 yellow
NT_033890AC013253827522991none none none 1 confirm
 13733 strong
2 green
NT_033890AC012465827540541none none none 0 confirm
 4615 strong
2 green
1 yellow
NT_033890AL3916658283241321 blue
 none 2 blue
5 pink
 14 confirm
2 red
 38586 strong
2 yellow
NT_033890AL1334818295260631 blue
 none 6 blue
8 pink
 17 confirm
1 pink
1 red
 1986 medium
2 yellow
NT_033890AC068139830569963none none 4 blue
2 pink
 23 confirm
14 pink
2 red
 21981 strong
2 yellow
NT_033890AL132656832337843none 1 pink
 6 blue
9 pink
 22 confirm
35 pink
 1974 weak
1 yellow
NT_033890AL603703833650483none none none 0 confirm
1 pink
 2000 strong
NT_033890AL135925833670423none none none 17 confirm
15 pink
 0 weak
NT_033890AL512662834251913none none 3 blue
1 pink
1 red
 27 confirm
25 pink
 100 weak
NT_033890AL356095835595023none none 11 blue
 17 confirm
5 pink
 1999 medium
2 yellow
NT_033890AL513174837314813none none 1 pink
 5 confirm
1 red
 0 weak
2 yellow
NT_033890AL359195838099653none none 1 blue
 9 confirm
 8779 strong
2 yellow
NT_033890AC021028839791131none none 12 blue
 14 confirm
 2648 strong


  NT_033890 (cont)
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_033890AC063966841325501none none none 17 confirm
 3505 strong
NT_033890AC016818842202651none none none 0 confirm
 23060 strong
1 green
NT_033890AC009405842202663none none none 9 confirm
 118979 strong
NT_033890AC027673842875253none none none 17 confirm
 19186 strong
1 green
NT_033890AC013242844570771none none none 16 confirm
 1451 medium
1 green
NT_033890AL3561548461102121 blue
1 green
 none 1 red
 18 confirm
 2000 medium
1 green
NT_033890AL356307847643293none none none 14 confirm
 2000 strong
NT_033890AL512627848458683none none none 2 confirm
 2000 strong
NT_033890AL161650848709473none none none 23 confirm
 1994 medium
1 yellow
NT_033890AL0967078502926931 blue
 none none 22 confirm
 100 weak
1 yellow
NT_033890AL356795851602193none none none 9 confirm
 0 weak
NT_033890AL096704852322563none none none 5 confirm
 0 weak
NT_033890AL096706853284263none none none 9 confirm
 100 weak
NT_033890AL0968638553328131 blue
 2 blue
 2 blue
 13 confirm
 100 weak
NT_033890AL096864855442743none none none 14 confirm
 101 weak
NT_033890AL0967058573174531 blue
 1 blue
 1 blue
 9 confirm
 76830 strong
NT_033890AC010157857491973none none 3 blue
 14 confirm
 1993 medium
NT_033890AL356129858325683none none none 5 confirm
 2000 strong
NT_033890AL3914788595665731 blue
 1 blue
 8 blue
 14 confirm
 2000 strong
NT_033890AL513316860434493none none none 4 confirm
 1994 medium
NT_033890AL358552860593513none none 4 blue
 14 confirm
 0 weak
1 yellow
NT_033890AL513204862214963none none 1 blue
 20 confirm
 36896 strong
2 yellow
NT_033890AL354749863325693none none 1 blue
 24 confirm
 2000 strong
2 yellow
NT_033890AL136085864916733none none none 1 confirm
 1999 medium
NT_033890AL589782865384333none none 2 blue
 17 confirm
 0 weak
1 yellow


  NT_033890 (cont)
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_033890AL592302867138573none none none 14 confirm
 0 weak
1 yellow
NT_033890AL451146867911601none none none 16 confirm
 2000 strong
1 yellow
NT_033890AL356140869900513none none none 20 confirm
 2000 strong
NT_033890AL1387638719355432 blue
1 green
 2 blue
 4 blue
 14 confirm
 1998 medium
NT_033890AL354918872084413none none none 1 confirm
 2006 strong
NT_033890AC0695408736473831 blue
 1 blue
 none 18 confirm
9 pink
 0 weak
1 yellow
NT_033890-  0 yellow
 0 yellow
 6 yellow