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  Chromosome 10 - Summary - Single Contig
 
Description of this page Main Reports Page Main Assembly Page Main Summary Page Whole Chromosome Single Contigs

Cell color code:

ColorGenetic, YAC, RHBAC End PairsClone Overlaps
WhiteNo markers placedAll clone bridges in same contigBest overlap with succeeding clone or no overlaps
BlueMarker consistent with alignment of STS mapClone bridges two adjacent contigs 
GreenMarker slightly inconsistent with alignment of STS mapClone bridges close contigsOverlap with non-adjacent clone in same contig
PinkMarker inconsistent with STS map, same chromosomeMulitple clones bridge to distant contig, same chromosomeOverlap with clone on different contig, same chromosome
RedMarker inconsistent with STS map, different chromosomeMulitple clones bridge to contig on different chromosomeOverlap with clone on different chromosome
YellowMarker not placed on any accession in contig, but alignment with STS map indicates it is in contig Overlap with clone not used in assembly

NT_024115 NT_024081 NT_033983 NT_033894 NT_033916 NT_008705 NT_033921 NT_033986
NT_033892 NT_033226 NT_033223 NT_033227 NT_033912 NT_033982 NT_033988 NT_033896
NT_024133 NT_033987 NT_033985 NT_031847 NT_030066 NT_030772 NT_033228 NT_008646
NT_017696 NT_031860 NT_033898 NT_033920 NT_008748 NT_033222 NT_033990 NT_024085
NT_033984 NT_008797 NT_033897 NT_008583 NT_033220 NT_033891 NT_033895 NT_033917
NT_033989 NT_033918 NT_033919 NT_033893 NT_024037 NT_030075 NT_033890 NT_024064
NT_030070 NT_008769 NT_033229 NT_030059 NT_008818 NT_033221 NT_031855 NT_031856
NT_008902 NT_030764 NT_027097 NT_024086 NT_025835 NT_033224 NT_033225 NT_024040
NT_017795 NT_028298


  NT_008646
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_008646AC012044487685091none none none 0 confirm
 0 weak
1 green
2 yellow
NT_008646AL512595487701093none none 1 blue
 5 confirm
9 pink
 6495 strong
NT_008646AL445201488443893none none 2 blue
 9 confirm
21 pink
 0 weak
1 green
1 yellow
NT_008646AL645998490215823none none none 2 confirm
1 pink
 4697 strong
1 yellow
NT_008646AC021320490320231none none none 0 confirm
 0 weak
1 green
1 yellow
NT_008646AL391137490330501none none 2 blue
 2 confirm
4 blue
58 pink
 2000 strong
3 pink
NT_008646AL390716492092193none none 1 blue
 2 confirm
3 blue
18 pink
 0 weak
NT_008646AC021411492843501none none none 0 confirm
 66443 strong
1 green
1 pink
NT_008646AL589822492940802none none none 4 confirm
11 pink
 75843 strong
NT_008646AL450342493782343none none 4 blue
2 green
2 pink
 7 confirm
11 pink
 0 weak
1 green
NT_008646AL442003495701543none none 1 blue
1 pink
 9 confirm
27 pink
 0 weak
1 yellow
NT_008646AL4503824982641931 green
 3 pink
 3 blue
4 pink
 15 confirm
4 pink
 0 weak
3 yellow
NT_008646AC0695474998739132 green
 2 pink
 2 green
7 pink
 17 confirm
1 pink
 63022 strong
2 yellow
NT_008646AL1173415019241331 green
 2 pink
 1 green
5 pink
 12 confirm
1 pink
 1998 medium
NT_008646AL596137501974013none none none 5 confirm
1 pink
 1999 medium
NT_008646AL589794502468802none 1 pink
 4 pink
1 red
 23 confirm
2 blue
14 pink
 0 weak
1 yellow
NT_008646AL5123665052350031 green
 1 pink
 1 pink
 12 confirm
19 pink
 54265 strong
1 yellow
NT_008646AC044786505577233none none none 0 confirm
2 pink
 0 weak
NT_008646AL450388505871123none none 1 green
 8 confirm
19 pink
 2000 strong
1 green
NT_008646AL603965507456083none none 1 blue
1 red
 8 confirm
5 blue
29 pink
 0 weak
1 pink
NT_008646-  0 yellow
 0 yellow
 2 yellow